(Q37683062)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

Differences in Ureolytic Bacterial Composition between the Rumen Digesta and Rumen Wall Based on ureC Gene Classification (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Stuart E Denman

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

author name string

Di Jin

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Shengguo Zhao

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Nan Zheng

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Dengpan Bu

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Christopher S McSweeney

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Jiaqi Wang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

publication date

7 March 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Microbiology

13 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

page(s)

385

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

13 March 2020

phyloseq

object named as

Phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Reducing microbial ureolytic activity in the rumen by immunization against urease therein

23 August 2017

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 August 2017

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23 August 2017

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Methylomonas lenta sp. nov., a methanotroph isolated from manure and a denitrification tank

23 August 2017

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Phylogenetically diverse ureC genes and their expression suggest the urea utilization by bacterial symbionts in marine sponge Xestospongia testudinaria

23 August 2017

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phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

23 August 2017

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Changes in the rumen epimural bacterial diversity of beef cattle as affected by diet and induced ruminal acidosis.

23 August 2017

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Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

23 August 2017

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Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.

23 August 2017

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FLASH: fast length adjustment of short reads to improve genome assemblies

23 August 2017

1 reference

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UCHIME improves sensitivity and speed of chimera detection

23 August 2017

1 reference

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Genomic potential of Marinobacter aquaeolei, a biogeochemical "opportunitroph"

23 August 2017

1 reference

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Detection, isolation, and characterization of helicobacter species from the gastrointestinal tract of the brushtail possum.

23 August 2017

1 reference

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pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

23 August 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

A flexible R package for nonnegative matrix factorization

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

QIIME allows analysis of high-throughput community sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Interplay of metal ions and urease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Diversity of urea-degrading microorganisms in open-ocean and estuarine planktonic communities.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Methylophilus rhizosphaerae sp. nov., a restricted facultative methylotroph isolated from rice rhizosphere soil

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Howardella ureilytica gen. nov., sp. nov., a Gram-positive, coccoid-shaped bacterium from a sheep rumen

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Methylophilus quaylei sp. nov., a new aerobic obligately methylotrophic bacterium.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Scoredist: a simple and robust protein sequence distance estimator

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

16S rDNA library-based analysis of ruminal bacterial diversity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

ARB: a software environment for sequence data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Comparison of diagnostic techniques for Helicobacter cetorum infection in wild Atlantic bottlenose dolphins (Tursiops truncatus).

23 August 2017

1 reference

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Helicobacter cetorum sp. nov., a urease-positive Helicobacter species isolated from dolphins and whales

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

The non-H pylori helicobacters: their expanding role in gastrointestinal and systemic diseases

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Molecular biology of microbial ureases

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Urease assay and urease-producing species of anaerobes in the bovine rumen and human feces

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Bacterial ureases: structure, regulation of expression and role in pathogenesis

23 August 2017

1 reference

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Urea-N recycling in lactating dairy cows fed diets with 2 different levels of dietary crude protein and starch with or without monensin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Optimization of a high-throughput CTAB-based protocol for the extraction of qPCR-grade DNA from rumen fluid, plant and bacterial pure cultures.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

The effects of ruminally degraded protein on rumen fermentation and ammonia losses from manure in dairy cows

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Urease production by Streptococcus thermophilus

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Sites of pH regulation of the urea channel of Helicobacter pylori

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Emended description of Campylobacter sputorum and revision of its infrasubspecific (biovar) divisions, including C. sputorum biovar paraureolyticus, a urease-producing variant from cattle and humans

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Characterisation of a binding-protein-dependent, active transport system for short-chain amides and urea in the methylotrophic bacterium Methylophilus methylotrophus.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5339240

Slow ammonia release from urea: rumen and metabolism studies

1 September 2018

1 reference

12 December 2020

Effect of urea inclusion in diets containing corn dried distillers grains on feedlot cattle performance, carcass characteristics, ruminal fermentation, total tract digestibility, and purine derivatives-to-creatinine index

1 reference

12 December 2020

The effect of rumen degradable and rumen undegradable intake protein on feedlot performance and carcass merit in heavy yearling steers

1 reference

12 December 2020

Urea in dry-rolled corn diets: finishing steer performance, nutrient digestion, and microbial protein production

1 reference

12 December 2020

Automated simultaneous determination of ammonia and total amino acids in ruminal fluid and in vitro media

1 reference

12 December 2020

Survey of urease activity in ruminal bacteria isolated from domestic and wild ruminants

1 reference

12 December 2020

Urease activity in the rumen of sheep and the isolation of ureolytic bacteria

1 reference

12 December 2020

Identifiers

DOI

10.3389/FMICB.2017.00385

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28326079%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference