(Q37696431)

22 August 2017

1 reference

title

Recent advances in understanding the molecular mechanisms regulating C. elegans transcription (English)

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22 August 2017

main subject

Caenorhabditis elegans

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James D McGhee

2

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author name string

Jeb Gaudet

series ordinal

1

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22 August 2017

publication date

1 May 2010

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22 August 2017

published in

Developmental Dynamics

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22 August 2017

volume

239

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22 August 2017

issue

5

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22 August 2017

page(s)

1388-1404

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Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoter

22 August 2017

cites work

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Structure and evolution of the C. elegans embryonic endomesoderm network

21 January 2018

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21 January 2018

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SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response

21 January 2018

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7 January 2021

Regulation of the Caenorhabditis elegans oxidative stress defense protein SKN-1 by glycogen synthase kinase-3.

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7 January 2021

Nucleosomes are well positioned in exons and carry characteristic histone modifications

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7 January 2021

Mapping accessible chromatin regions using Sono-Seq

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https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromatin poises miRNA- and protein-coding genes for expression

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https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Genomic location analysis by ChIP-Seq

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

RNA Pol II accumulates at promoters of growth genes during developmental arrest.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The MES-2/MES-3/MES-6 complex and regulation of histone H3 methylation in C. elegans

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https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Linking asymmetric cell division to the terminal differentiation program of postmitotic neurons in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromatin insulators: regulatory mechanisms and epigenetic inheritance

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https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Mediator complexes and eukaryotic transcription regulation: an overview

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Linking DNA methylation and histone modification: patterns and paradigms

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

sel-7, a positive regulator of lin-12 activity, encodes a novel nuclear protein in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The biology of chromatin remodeling complexes

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Transcriptional control of cell-cycle quiescence during C. elegans development

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The TRA-1A sex determination protein of C. elegans regulates sexually dimorphic cell deaths by repressing the egl-1 cell death activator gene

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Purification of proteins associated with specific genomic Loci

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The differentially expressed 16-kD heat shock genes of Caenorhabditis elegans exhibit differential changes in chromatin structure during heat shock

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Automated screening for mutants affecting dopaminergic-neuron specification in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A gut-to-pharynx/tail switch in embryonic expression of the Caenorhabditis elegans ges-1 gene centers on two GATA sequences.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

C. elegans dosage compensation: a window into mechanisms of domain-scale gene regulation

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Activator-specific recruitment of Mediator in vivo

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The SynMuv genes of Caenorhabditis elegans in vulval development and beyond

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Rapid high resolution single nucleotide polymorphism-comparative genome hybridization mapping in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The embryonic muscle transcriptome of Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Defining mechanisms that regulate RNA polymerase II transcription in vivo

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: evidence for a unified theory of animal muscle development

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The CSL transcription factor LAG-1 directly represses hlh-6 expression in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Evidence that RME-1, a conserved C. elegans EH-domain protein, functions in endocytic recycling.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Global transcriptional repression in C. elegans germline precursors by regulated sequestration of TAF-4

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Regulation of transcription termination in the nematode Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The Caenorhabditis elegans HNF4alpha Homolog, NHR-31, mediates excretory tube growth and function through coordinate regulation of the vacuolar ATPase

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Loss of the insulator protein CTCF during nematode evolution

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Assembly of variant histones into chromatin

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Regulatory logic of neuronal diversity: terminal selector genes and selector motifs.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

C. elegans EOR-1/PLZF and EOR-2 positively regulate Ras and Wnt signaling and function redundantly with LIN-25 and the SUR-2 Mediator component

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The C. elegans p38 MAPK pathway regulates nuclear localization of the transcription factor SKN-1 in oxidative stress response

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A C. elegans LSD1 demethylase contributes to germline immortality by reprogramming epigenetic memory

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Developmental logic and its evolution

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Differential chromatin marking of introns and expressed exons by H3K36me3.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The molecular basis of eukaryotic transcription

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromatin structure; oligomers of the histones

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromatin modifications and their function

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The UCSC Genome Browser Database: update 2009

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Multigenome DNA sequence conservation identifies Hox cis-regulatory elements

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Caenorhabditis elegans mediator complexes are required for developmental-specific transcriptional activation

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The MED-7 transcriptional mediator encoded by let-49 is required for gonad and germ cell development in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The role of chromatin during transcription

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Knockdown of SKN-1 and the Wnt effector TCF/POP-1 reveals differences in endomesoderm specification in C. briggsae as compared with C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Transcriptional regulation of AQP-8, a Caenorhabditis elegans aquaporin exclusively expressed in the excretory system, by the POU homeobox transcription factor CEH-6.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Inducible antibacterial defense system in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The molecular basis of organ formation: insights from the C. elegans foregut

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Coordination of ges-1 expression between the Caenorhabditis pharynx and intestine.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The C. elegans intestine

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A 200 base pair region at the 5' end of the chicken adult beta-globin gene is accessible to nuclease digestion

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Towards a mutation in every gene in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A component of the transcriptional mediator complex inhibits RAS-dependent vulval fate specification in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Regulation of metallothionein gene transcription. Identification of upstream regulatory elements and transcription factors responsible for cell-specific expression of the metallothionein genes from Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

pha-2 encodes the C. elegans ortholog of the homeodomain protein HEX and is required for the formation of the pharyngeal isthmus

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The regulatory content of intergenic DNA shapes genome architecture

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Notch-GATA synergy promotes endoderm-specific expression of ref-1 in C. elegans.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Cis-regulatory mutations in the Caenorhabditis elegans homeobox gene locus cog-1 affect neuronal development

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Gland-specific expression of C. elegans hlh-6 requires the combinatorial action of three distinct promoter elements

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

An iron enhancer element in the FTN-1 gene directs iron-dependent expression in Caenorhabditis elegans intestine

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The T-box factor TBX-2 and the SUMO conjugating enzyme UBC-9 are required for ABa-derived pharyngeal muscle in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Axon guidance genes identified in a large-scale RNAi screen using the RNAi-hypersensitive Caenorhabditis elegans strain nre-1(hd20) lin-15b(hd126).

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

What controls nucleosome positions?

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A CBP/p300 homolog specifies multiple differentiation pathways in Caenorhabditis elegans.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

sur-2, a novel gene, functions late in the let-60 ras-mediated signaling pathway during Caenorhabditis elegans vulval induction

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Role of T-box gene tbx-2 for anterior foregut muscle development in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The embryonic cell lineage of the nematode Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A Mediator subunit, MDT-15, integrates regulation of fatty acid metabolism by NHR-49-dependent and -independent pathways in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The Mediator subunit MDT-15 confers metabolic adaptation to ingested material

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The Caenorhabditis elegans peb-1 gene encodes a novel DNA-binding protein involved in morphogenesis of the pharynx, vulva, and hindgut

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The C. elegans che-1 gene encodes a zinc finger transcription factor required for specification of the ASE chemosensory neurons

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Temporal regulation of foregut development by HTZ-1/H2A.Z and PHA-4/FoxA

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Identification of cis-regulatory elements from the C. elegans Hox gene lin-39 required for embryonic expression and for regulation by the transcription factors LIN-1, LIN-31 and LIN-39.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

A broad but restricted requirement for TAF-5 (human TAFII100) for embryonic transcription in Caenorhabditis elegans.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Distinct requirements for C.elegans TAF(II)s in early embryonic transcription

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

An extensive requirement for transcription factor IID-specific TAF-1 in Caenorhabditis elegans embryonic transcription

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The Caenorhabditis elegans ortholog of TRAP240, CeTRAP240/let-19, selectively modulates gene expression and is essential for embryogenesis

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The temporally regulated transcription factor sel-7 controls developmental timing in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

An ARC/Mediator subunit required for SREBP control of cholesterol and lipid homeostasis

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Components of the transcriptional Mediator complex are required for asymmetric cell division in C. elegans

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

The polycomb complex protein mes-2/E(z) promotes the transition from developmental plasticity to differentiation in C. elegans embryos.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Distinct regulatory elements mediate similar expression patterns in the excretory cell of Caenorhabditis elegans.

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

end-1 encodes an apparent GATA factor that specifies the endoderm precursor in Caenorhabditis elegans embryos

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.22246

7 January 2021

Identifiers

DOI

10.1002/DVDY.22246

1 reference

22 August 2017

1 reference