(Q37707224)

22 August 2017

Identification and annotation of small RNA genes using ShortStack (English)

1 reference

22 August 2017

Saima Shahid

1

1 reference

PMCID

3989477

22 August 2017

Michael J Axtell

series ordinal

2

1 reference

PMCID

3989477

22 August 2017

language of work or name

1 reference

16 October 2013

1 reference

22 August 2017

1 reference

22 August 2017

67

1 reference

22 August 2017

1

1 reference

22 August 2017

20-27

1 reference

ShortStack: comprehensive annotation and quantification of small RNA genes

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Deep-sequencing protocols influence the results obtained in small-RNA sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

23 August 2017

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Phytozome: a comparative platform for green plant genomics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

miRBase: integrating microRNA annotation and deep-sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

The Sequence Alignment/Map format and SAMtools

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

EMBOSS: the European Molecular Biology Open Software Suite

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Classification and comparison of small RNAs from plants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3989477

Cutadapt removes adapter sequences from high-throughput sequencing reads

6 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YMETH.2013.10.004

10.1016/J.YMETH.2013.10.004

7 January 2021

Identifiers

DOI

1 reference

22 August 2017

1 reference

22 August 2017

1 reference

PMCID

3989477