(Q37727197)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

review article

1 reference

title

Peek a peak: a glance at statistics for quantitative label-free proteomics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

0 references

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Michael Turewicz

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

author name string

Katharina Podwojski

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Martin Eisenacher

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Michael Kohl

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Helmut E Meyer

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

Christian Stephan

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

publication date

1 April 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

Expert Review of Proteomics

30 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

30 January 2020

page(s)

249-261

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20377391%20AND%20SRC:MED&resulttype=core&format=json

Proteomics as a method for early detection of cancer: a review of proteomics, exhaled breath condensate, and lung cancer screening

30 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

The biological impact of mass-spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Protein biomarker discovery and validation: the long and uncertain path to clinical utility

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

The cancer biomarker problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Differential proteomics: an overview of gel and non-gel based approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Two-dimensional electrophoresis of proteins: an updated protocol and implications for a functional analysis of the genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Label-free mass spectrometry-based protein quantification technologies in proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Mass spectrometry-based proteomics turns quantitative

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Approaches for the quantification of protein concentration ratios

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Mass spectrometry-based peptide quantification: applications and limitations

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Differential mass spectrometry: a label-free LC-MS method for finding significant differences in complex peptide and protein mixtures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Large-scale proteomic analysis of the human spliceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Significance analysis of spectral count data in label-free shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Interpretation of shotgun proteomic data: the protein inference problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A correlation algorithm for the automated quantitative analysis of shotgun proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Mass spectrometry and protein analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Use of proteomic patterns in serum to identify ovarian cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Difference detection in LC-MS data for protein biomarker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

TOPP--the OpenMS proteomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Improved model-based, platform-independent feature extraction for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

An Automated Peak Identification/Calibration Procedure for High-Dimensional Protein Measures From Mass Spectrometers

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A geometric approach for the alignment of liquid chromatography-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Optimized time alignment algorithm for LC-MS data: correlation optimized warping using component detection algorithm-selected mass chromatograms

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A statistical method for chromatographic alignment of LC-MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A comparison of three algorithms for chromatograms alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Chromatographic alignment by warping and dynamic programming as a pre-processing tool for PARAFAC modelling of liquid chromatography-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Two-dimensional method for time aligning liquid chromatography-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

ChromAlign: A two-step algorithmic procedure for time alignment of three-dimensional LC-MS chromatographic surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Retention time alignment algorithms for LC/MS data must consider non-linear shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Development and evaluation of normalization methods for label-free relative quantification of endogenous peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Missing value estimation methods for DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Protein sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Open mass spectrometry search algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Biomedical informatics for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Data analysis--the Achilles heel of proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Analysis and validation of proteomic data generated by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Posterior error probabilities and false discovery rates: two sides of the same coin

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

The International Protein Index: an integrated database for proteomics experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

A statistical model for identifying proteins by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Changes in the protein expression of yeast as a function of carbon source

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Detecting differential and correlated protein expression in label-free shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Statistical significance for genomewide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: non-label methods comparison, q-values and LOWESS curve fitting

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

The effects of shared peptides on protein quantitation in label-free proteomics by LC/MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Scoring proteomes with proteotypic peptide probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Study of Early Leaf Senescence inArabidopsis thalianaby Quantitative Proteomics Using Reciprocal14N/15N Labeling and Difference Gel Electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107

Semi-supervised LC/MS alignment for differential proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2FEPR.09.107