(Q37730548)

22 August 2017

ROBUST HYPERPARAMETER ESTIMATION PROTECTS AGAINST HYPERVARIABLE GENES AND IMPROVES POWER TO DETECT DIFFERENTIAL EXPRESSION. (English)

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22 August 2017

1

Belinda Phipson

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22 August 2017

5

Gordon K Smyth

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22 August 2017

Stanley Lee

2

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22 August 2017

Ian J Majewski

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3

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22 August 2017

Warren S Alexander

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4

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22 August 2017

1 June 2016

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The Annals of Applied Statistics

22 August 2017

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22 August 2017

10

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22 August 2017

2

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22 August 2017

946-963

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describes a project that uses

22 August 2017

limma

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22 June 2022

https://europepmc.org/article/PMC/5373812

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cites work

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csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows

23 August 2017

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diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data

23 August 2017

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MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo

23 August 2017

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limma powers differential expression analyses for RNA-sequencing and microarray studies

23 August 2017

1 reference

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Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ

23 August 2017

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Robustly detecting differential expression in RNA sequencing data using observation weights

23 August 2017

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voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

23 August 2017

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Prior robust empirical Bayes inference for large-scale data by conditioning on rank with application to microarray data.

23 August 2017

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Noisy splicing drives mRNA isoform diversity in human cells.

23 August 2017

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Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips

23 August 2017

1 reference

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Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies

23 August 2017

1 reference

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Analyzing 'omics data using hierarchical models

23 August 2017

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

23 August 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 August 2017

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Comparison of small n statistical tests of differential expression applied to microarrays

23 August 2017

1 reference

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Polycomb repressive complex 2 (PRC2) restricts hematopoietic stem cell activity

23 August 2017

1 reference

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Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments

23 August 2017

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

23 August 2017

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

23 August 2017

1 reference

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A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

23 August 2017

1 reference

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It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.

23 August 2017

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Testing significance relative to a fold-change threshold is a TREAT.

6 September 2017

1 reference

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Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells.

23 June 2018

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Bayesian robust inference for differential gene expression in microarrays with multiple samples.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5373812

Significance testing for small microarray experiments

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5373812

A random variance model for detection of differential gene expression in small microarray experiments

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5373812

1 September 2018

Identifiers

DOI

10.1214/16-AOAS920

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22 August 2017

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22 August 2017

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