(Q37734330)

English

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies

scientific article published on 19 February 2014

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies (English)

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Mechanism of a nucleotide dependent transcription activation process

1 reference

Gateway to Research

Gateway to Research Project ID

27 April 2019

9

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11

object named as

Peter G Stockley

0 references

Christopher Gell

object named as

Christopher Gell

3

0 references

Sivaramesh Wigneshweraraj

object named as

Sivaramesh Wigneshweraraj

7

0 references

12

object named as

Roman Tuma

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

author name string

Amit Sharma

1

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Robert N Leach

2

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Nan Zhang

4

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Patricia C Burrows

5

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Dale A Shepherd

6

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

David Alastair Smith

8

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Martin Buck

10

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

language of work or name

0 references

publication date

19 February 2014

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

full work available at URL

http://eprints.whiterose.ac.uk/83662/

content deliverer

White Rose Research Online

0 references

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

42

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

8

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

5177-5190

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

copyright license

Creative Commons Attribution 3.0 Unported

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Nucleotide-induced asymmetry within ATPase activator ring drives 54-RNAP interaction and ATP hydrolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Structural basis of transcription initiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Evidence that viral RNAs have evolved for efficient, two-stage packaging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Opening and closing of the bacterial RNA polymerase clamp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Direct detection of abortive RNA transcripts in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Organization of an activator-bound RNA polymerase holoenzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Alternating-laser excitation of single molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Mechanochemical ATPases and transcriptional activation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Regulatory sequences in sigma 54 localise near the start of DNA melting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Isomerization of a binary sigma-promoter DNA complex by transcription activators.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Fluorescence resonance energy transfer and nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

22 August 2017

Interactions of regulated and deregulated forms of the sigma54 holoenzyme with heteroduplex promoter DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

6 September 2017

Binding affinity of Escherichia coli RNA polymerase*sigma54 holoenzyme for the glnAp2, nifH and nifL promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

14 September 2017

Engineered interfaces of an AAA+ ATPase reveal a new nucleotide-dependent coordination mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

14 September 2017

Reorganisation of an RNA polymerase-promoter DNA complex for DNA melting.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

14 September 2017

Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

14 September 2017

Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Protein-DNA interactions that govern AAA+ activator-dependent bacterial transcription initiation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Structural insights into the activity of enhancer-binding proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Communication between Esigma(54) , promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF sigma-dependent activator during transcription activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Sequences in sigmaN determining holoenzyme formation and properties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

The transcription initiation pathway of sigma 54 mutants that bypass the enhancer protein requirement. Implications for the mechanism of activation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

DNA distortion and nucleation of local DNA unwinding within sigma-54 (sigma N) holoenzyme closed promoter complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Function of a bacterial activator protein that binds to transcriptional enhancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

23 June 2018

Mapping ATP-dependent activation at a sigma54 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 September 2018

The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 September 2018

Cooperative mechanism of RNA packaging motor

1 reference

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Using fluorescence resonance energy transfer to measure distances along individual DNA molecules: corrections due to nonideal transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 September 2018

The sigma 54 DNA-binding domain includes a determinant of enhancer responsiveness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 September 2018

A novel bacterial transcription cycle involving sigma 54.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 September 2018

Structural evolution of multisubunit RNA polymerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4005640

1 October 2018

Low Resolution Structure of the ς54 Transcription Factor Revealed by X-ray Solution Scattering

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU146

21 January 2018

Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/24553251

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coupled assay of Na+,K+-ATPase activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/24553251

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational changes of Escherichia coli RNA polymerase sigma70 factor induced by binding to the core enzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/24553251

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKU146

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

10.1093/NAR/GKU146

0 references

0 references

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

ResearchGate publication ID

0 references

2-s2.0-84899864637

0 references

Web of Science ID (work)

000336092300044

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