(Q37739034)

22 August 2017

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title

Application of second-generation sequencing to cancer genomics (English)

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22 August 2017

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Keith Robison

1

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22 August 2017

28 April 2010

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Briefings in Bioinformatics

22 August 2017

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22 August 2017

11

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22 August 2017

524-534

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22 August 2017

5

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Principles of cancer therapy: oncogene and non-oncogene addiction

22 August 2017

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

The challenges of sequencing by synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

The ethical use of existing samples for genome research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

KLF6 and TP53 mutations are a rare event in prostate cancer: distinguishing between Taq polymerase artifacts and true mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Whole genome amplification and de novo assembly of single bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Mutation patterns in cancer genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Digital PCR provides sensitive and absolute calibration for high throughput sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Quantification of rare allelic variants from pooled genomic DNA

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Cancers exhibit a mutator phenotype: clinical implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A small-cell lung cancer genome with complex signatures of tobacco exposure

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A comprehensive catalogue of somatic mutations from a human cancer genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Chimeric transcript discovery by paired-end transcriptome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Single-molecule sequencing of an individual human genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Building the sequence map of the human pan-genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Microindel detection in short-read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

BFAST: an alignment tool for large scale genome resequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A genomic screen for genes upregulated by demethylation and histone deacetylase inhibition in human colorectal cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Genome variation discovery with high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Recurring mutations found by sequencing an acute myeloid leukemia genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Computational methods for discovering structural variation with next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Integrative analysis of the melanoma transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Development of personalized tumor biomarkers using massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

HI: haplotype improver using paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Acquired resistance of lung adenocarcinomas to gefitinib or erlotinib is associated with a second mutation in the EGFR kinase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Somatic and germline genetics at the JAK2 locus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

High-resolution mapping of copy-number alterations with massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Evaluation of next generation sequencing platforms for population targeted sequencing studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Probabilistic base calling of Solexa sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A large genome center's improvements to the Illumina sequencing system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Methods for genomic partitioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Microdroplet-based PCR enrichment for large-scale targeted sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Smoothened mutation confers resistance to a Hedgehog pathway inhibitor in medulloblastoma.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

FRT-seq: amplification-free, strand-specific transcriptome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Digital transcriptome profiling from attomole-level RNA samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Mutation ofFOXL2in Granulosa-Cell Tumors of the Ovary

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Transcriptome sequencing of malignant pleural mesothelioma tumors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Transcriptome sequencing to detect gene fusions in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Automated inference of molecular mechanisms of disease from amino acid substitutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

CanPredict: a computational tool for predicting cancer-associated missense mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

The SAAPdb web resource: a large-scale structural analysis of mutant proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Sequence and structure signatures of cancer mutation hotspots in protein kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Prediction of cancer driver mutations in protein kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Cancer-associated mutations are preferentially distributed in protein kinase functional sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Computational prediction of the functional effects of amino acid substitutions in signal peptides using a model-based approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Identification of rare cancer driver mutations by network reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Predicting functional regulatory polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

ChimerDB 2.0--a knowledgebase for fusion genes updated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBQ013

21 January 2018

Identifiers

DOI

10.1093/BIB/BBQ013

1 reference

22 August 2017

journals/bib/Robison10a

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

20427421