(Q37788028)

23 August 2017

title

Genome-wide maps of transcription regulatory elements (English)

1 reference

23 August 2017

Genome‐wide maps of transcription regulatory elements (English)

1 reference

11 July 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20836039

11 July 2024

trans-regulatory element

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20836039

11 July 2024

author name string

Noboru J. Sakabe

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20836039

11 July 2024

Marcelo A. Nobrega

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20836039

11 July 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20836039

11 July 2024

publication date

1 July 2010

1 reference

full work available at URL

23 August 2017

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fwsbm.70

1 reference

https://onlinelibrary.wiley.com/doi/pdf/10.1002/wsbm.70

11 July 2024

1 reference

https://onlinelibrary.wiley.com/doi/full-xml/10.1002/wsbm.70

11 July 2024

1 reference

https://wires.onlinelibrary.wiley.com/doi/pdf/10.1002/wsbm.70

11 July 2024

1 reference

Wiley interdisciplinary reviews. Systems biology and medicine

11 July 2024

published in

1 reference

23 August 2017

volume

2

1 reference

23 August 2017

issue

4

1 reference

23 August 2017

page(s)

422-437

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High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

23 August 2017

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FWSBM.70

Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty

21 January 2018

1 reference

19 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1086/406830

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

1

1 reference

The evolution of transcriptional regulation in eukaryotes

11 July 2024

2

1 reference

Evolutionary biology. Deciphering the genetics of evolution

11 July 2024

3

1 reference

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

11 July 2024

4

1 reference

A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk.

11 July 2024

5

1 reference

Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip

11 July 2024

6

1 reference

Long-range control of gene expression: emerging mechanisms and disruption in disease

11 July 2024

7

1 reference

Transcription factor 7-like 2 (TCF7L2) variant is associated with familial breast cancer risk: a case-control study

11 July 2024

8

1 reference

Variant of transcription factor 7-like 2 (TCF7L2) gene confers risk of type 2 diabetes

11 July 2024

9

1 reference

Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits

11 July 2024

10

1 reference

A variant in CDKAL1 influences insulin response and risk of type 2 diabetes

11 July 2024

11

1 reference

Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.

11 July 2024

12

1 reference

Association between two unlinked loci at 8q24 and prostate cancer risk among European Americans.

11 July 2024

13

1 reference

Sequence variant on 8q24 confers susceptibility to urinary bladder cancer

11 July 2024

14

1 reference

Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants

11 July 2024

15

1 reference

An enhancer element in the house-keeping promoter for acetyl-CoA carboxylase gene

11 July 2024

17

1 reference

The mouse Pgk-1 gene promoter contains an upstream activator sequence

11 July 2024

18

1 reference

In vivo enhancer analysis of human conserved non-coding sequences

11 July 2024

19

1 reference

The ENCODE (ENCyclopedia Of DNA Elements) Project

11 July 2024

20

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

11 July 2024

21

1 reference

Organizing the genome: enhancers and insulators

11 July 2024

22

1 reference

Transcriptional Regulatory Elements in the Human Genome

11 July 2024

23

1 reference

Distant liaisons: long-range enhancer-promoter interactions in Drosophila.

11 July 2024

24

1 reference

Insulators: exploiting transcriptional and epigenetic mechanisms

11 July 2024

25

1 reference

11 July 2024

Chromatin insulators

26

1 reference

Facilitation of chromatin dynamics by SARs

11 July 2024

27

1 reference

Accessibility control of antigen-receptor variable-region gene assembly: role of cis-acting elements

11 July 2024

28

1 reference

Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

11 July 2024

29

1 reference

Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity

11 July 2024

31

1 reference

Analysis of sequence specificities of DNA-binding proteins with protein binding microarrays

11 July 2024

32

1 reference

Diversity and complexity in DNA recognition by transcription factors

11 July 2024

33

1 reference

Applied bioinformatics for the identification of regulatory elements

11 July 2024

34

1 reference

Computational identification of transcriptional regulatory elements in DNA sequence

11 July 2024

35

1 reference

A survey of DNA motif finding algorithms

11 July 2024

36

1 reference

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

11 July 2024

37

1 reference

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

11 July 2024

38

1 reference

Detection of cis-element clusters in higher eukaryotic DNA.

11 July 2024

39

1 reference

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

11 July 2024

40

1 reference

Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila

11 July 2024

41

1 reference

CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling

11 July 2024

42

1 reference

The identification and functional characterisation of conserved regulatory elements in developmental genes

11 July 2024

43

1 reference

Tuning in to the signals: noncoding sequence conservation in vertebrate genomes

11 July 2024

44

1 reference

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

11 July 2024

45

1 reference

Human-mouse genome comparisons to locate regulatory sites

11 July 2024

46

1 reference

Discovery of regulatory elements in vertebrates through comparative genomics.

11 July 2024

47

1 reference

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

11 July 2024

48

1 reference

Predicting tissue-specific enhancers in the human genome

11 July 2024

49

1 reference

Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

11 July 2024

50

1 reference

Highly conserved non-coding sequences are associated with vertebrate development

11 July 2024

51

1 reference

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.

11 July 2024

52

1 reference

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data

11 July 2024

53

1 reference

A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish

11 July 2024

55

1 reference

Conservation of RET regulatory function from human to zebrafish without sequence similarity

11 July 2024

56

1 reference

Tools for neuroanatomy and neurogenetics in Drosophila

11 July 2024

57

1 reference

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

11 July 2024

58

1 reference

Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus

11 July 2024

59

1 reference

Genome-wide analysis of protein-DNA interactions

11 July 2024

60

1 reference

BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals

11 July 2024

61

1 reference

Epitope tagging of endogenous proteins for genome-wide ChIP-chip studies

11 July 2024

62

1 reference

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

11 July 2024

63

1 reference

Histone modifications at human enhancers reflect global cell-type-specific gene expression

11 July 2024

64

1 reference

Predicting the in vivo signature of human gene regulatory sequences

11 July 2024

65

1 reference

Genome-wide location and function of DNA binding proteins

11 July 2024

66

1 reference

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

11 July 2024

67

1 reference

Genome-wide mapping of in vivo protein-DNA interactions

11 July 2024

68

1 reference

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

11 July 2024

69

1 reference

Serial analysis of gene expression

11 July 2024

70

1 reference

A global map of p53 transcription-factor binding sites in the human genome

11 July 2024

71

1 reference

Whole-genome cartography of estrogen receptor alpha binding sites

11 July 2024

72

1 reference

High-resolution mapping and characterization of open chromatin across the genome

11 July 2024

73

1 reference

Controlling the double helix

11 July 2024

74

1 reference

The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding

11 July 2024

75

1 reference

The histone H4 acetyltransferase MOF uses a C2HC zinc finger for substrate recognition

11 July 2024

76

1 reference

Methylation of histone H3 in euchromatin of plant chromosomes depends on basic nuclear DNA content

11 July 2024

77

1 reference

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

11 July 2024

78

1 reference

High-resolution profiling of histone methylations in the human genome

11 July 2024

79

1 reference

The relationship between chromatin structure and transcriptional activity in mammalian genomes

11 July 2024

80

1 reference

Using genomics to study how chromatin influences gene expression

11 July 2024

81

1 reference

Nuclease hypersensitive sites in chromatin

11 July 2024

82

1 reference

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

11 July 2024

83

1 reference

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns

11 July 2024

84

1 reference

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

11 July 2024

85

1 reference

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

11 July 2024

86

1 reference

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

11 July 2024

87

1 reference

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

11 July 2024

88

1 reference

The genomic landscape of histone modifications in human T cells

11 July 2024

89

1 reference

Combinatorial patterns of histone acetylations and methylations in the human genome

11 July 2024

90

1 reference

Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping

11 July 2024

91

1 reference

Dynamic regulation of nucleosome positioning in the human genome

11 July 2024

92

1 reference

Discovery of functional noncoding elements by digital analysis of chromatin structure

11 July 2024

93

1 reference

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

11 July 2024

94

1 reference

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

11 July 2024

95

1 reference

Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites

11 July 2024

96

1 reference

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

11 July 2024

97

1 reference

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

11 July 2024

98

1 reference

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

11 July 2024

99

1 reference

Global mapping of c-Myc binding sites and target gene networks in human B cells

11 July 2024

100

1 reference

Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

11 July 2024

101

1 reference

A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors

11 July 2024

102

1 reference

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

11 July 2024

103

1 reference

Chromatin signatures of pluripotent cell lines

11 July 2024

104

1 reference

Human ES cell profiling broadens the reach of bivalent domains

11 July 2024

105

1 reference

A chromatin landmark and transcription initiation at most promoters in human cells

11 July 2024

106

1 reference

Scanning Human Gene Deserts for Long-Range Enhancers

11 July 2024

107

1 reference

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb

11 July 2024

108

1 reference

The co-activator p300 associates physically with and can mediate the action of the distal enhancer of the FGF-4 gene

11 July 2024

109

1 reference

ChIP-seq accurately predicts tissue-specific activity of enhancers

11 July 2024

110

1 reference

Foxp3 occupancy and regulation of key target genes during T-cell stimulation

11 July 2024

111

1 reference

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

11 July 2024

112

1 reference

Species-specific transcription in mice carrying human chromosome 21

11 July 2024

113

1 reference

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

11 July 2024

115

1 reference

Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

11 July 2024

116

1 reference

A novel mode of enhancer evolution: the Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity

11 July 2024

117

1 reference

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

11 July 2024

118

1 reference

Origin of a substantial fraction of human regulatory sequences from transposable elements

11 July 2024

119

1 reference

A nucleosome-guided map of transcription factor binding sites in yeast

11 July 2024

120

1 reference

Computational epigenetics

11 July 2024

121

1 reference

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

11 July 2024

122

1 reference

11 July 2024

Identifiers

DOI

10.1002/WSBM.70

1 reference

23 August 2017

1 reference