(Q37855138)

24 August 2017

A clarification of the terms used in comparing semi-automated particle selection algorithms in Cryo-EM (English)

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.JSB.2011.03.009

cryogenic electron microscopy

27 November 2024

main subject

automation

0 references

0 references

algorithm

0 references

artificial intelligence

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21420497

27 November 2024

2

Joachim Frank

0 references

author name string

Robert Langlois

series ordinal

1

1 reference

24 August 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21420497

27 November 2024

publication date

21 March 2011

1 reference

full work available at URL

24 August 2017

https://europepmc.org/articles/pmc3164847?pdf=render

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21420497

https://europepmc.org/articles/PMC3164847

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21420497

https://europepmc.org/articles/PMC3164847?pdf=render

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21420497

https://doi.org/10.1016/j.jsb.2011.03.009

27 November 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21420497

https://api.elsevier.com/content/article/PII:S1047847711000748?httpAccept=text/xml

27 November 2024

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.JSB.2011.03.009

https://api.elsevier.com/content/article/PII:S1047847711000748?httpAccept=text/plain

27 November 2024

1 reference

Crossref

https://api.crossref.org/works/10.1016/J.JSB.2011.03.009

Journal of Structural Biology

27 November 2024

published in

1 reference

24 August 2017

175

1 reference

24 August 2017

3

1 reference

24 August 2017

348-352

1 reference

Automatic particle selection from electron micrographs using machine learning techniques

24 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

SLEUTH--a fast computer program for automatically detecting particles in electron microscope images

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Automatic particle pickup method using a neural network has high accuracy by applying an initial weight derived from eigenimages: a new reference free method for single-particle analysis.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Robust filtering and particle picking in micrograph images towards 3D reconstruction of purified proteins with cryo-electron microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Application of template matching technique to particle detection in electron micrographs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Historical background: Why is it important to improve automated particle selection methods?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Automatic particle selection: results of a comparative study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Detecting circular and rectangular particles based on geometric feature detection in electron micrographs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Model-based particle picking for cryo-electron microscopy

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

A binary segmentation approach for boxing ribosome particles in cryo EM micrographs

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Detecting particles in cryo-EM micrographs using learned features

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Automatic particle detection through efficient Hough transforms

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Automatic selection of macromolecules from electron micrographs by component labelling and symbolic processing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

SIGNATURE: a single-particle selection system for molecular electron microscopy

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

SwarmPS: rapid, semi-automated single particle selection software

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

An approach to automated particle picking from electron micrographs based on reduced representation templates

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Classical detection theory and the cryo-EM particle selection problem

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

FindEM--a fast, efficient program for automatic selection of particles from electron micrographs

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Particle finding in electron micrographs using a fast local correlation algorithm.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

A novel neural network technique for analysis and classification of EM single-particle images.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Mapping and fuzzy classification of macromolecular images using self-organizing neural networks.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164847

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

1 September 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2011.03.009

A Simple Generalisation of the Area Under the ROC Curve for Multiple Class Classification Problems

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2011.03.009

Identifiers

1 reference

24 August 2017

1 reference

24 August 2017

1 reference