(Q37909892)

25 August 2017

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title

Systems-biology approaches for predicting genomic evolution (English)

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25 August 2017

1

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25 August 2017

Richard A Notebaart

2

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25 August 2017

Csaba Pál

series ordinal

3

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25 August 2017

publication date

2 August 2011

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25 August 2017

published in

Nature Reviews Genetics

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25 August 2017

volume

12

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25 August 2017

issue

9

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25 August 2017

page(s)

591-602

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https://scigraph.springernature.com/pub.10.1038/nrg3033

25 August 2017

exact match

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cites work

The loci of evolution: how predictable is genetic evolution?

1 reference

Is genetic evolution predictable?

21 January 2018

1 reference

Genome evolution and adaptation in a long-term experiment with Escherichia coli

21 January 2018

1 reference

The great opportunity: Evolutionary applications to medicine and public health

21 January 2018

1 reference

Directed evolution of enzymes and biosynthetic pathways

21 January 2018

1 reference

Phenotypic consequences of 1,000 generations of selection at elevated CO2 in a green alga

21 January 2018

1 reference

Predicting the evolution of antibiotic resistance genes

21 January 2018

1 reference

Functional profiling of the Saccharomyces cerevisiae genome

21 January 2018

1 reference

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

21 January 2018

1 reference

The genetic landscape of a cell

21 January 2018

1 reference

Mechanistic approaches to the study of evolution: the functional synthesis

21 January 2018

1 reference

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

The danger of metabolic pathways with turbo design

21 January 2018

1 reference

Integrative analysis of cell cycle control in budding yeast

21 January 2018

1 reference

Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae

21 January 2018

1 reference

Applications of genome-scale metabolic reconstructions

21 January 2018

1 reference

Dynamic analysis of integrated signaling, metabolic, and regulatory networks

21 January 2018

1 reference

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

21 January 2018

1 reference

Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models

21 January 2018

1 reference

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

BRENDA, enzyme data and metabolic information

21 January 2018

1 reference

Network biology: understanding the cell's functional organization

21 January 2018

1 reference

Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions

21 January 2018

1 reference

Plasticity of genetic interactions in metabolic networks of yeast

21 January 2018

1 reference

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

21 January 2018

1 reference

Flux coupling analysis of genome-scale metabolic network reconstructions.

21 January 2018

1 reference

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model

21 January 2018

1 reference

Something from nothing: bridging the gap between constraint-based and kinetic modelling.

21 January 2018

1 reference

Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks

21 January 2018

1 reference

An integrated approach to characterize genetic interaction networks in yeast metabolism

21 January 2018

1 reference

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

21 January 2018

1 reference

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

21 January 2018

1 reference

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

21 January 2018

1 reference

Asymmetric relationships between proteins shape genome evolution.

21 January 2018

1 reference

The genetic theory of adaptation: a brief history

21 January 2018

1 reference

The evolution of sex: empirical insights into the roles of epistasis and drift

21 January 2018

1 reference

Role of duplicate genes in genetic robustness against null mutations

21 January 2018

1 reference

Robustness against mutations in genetic networks of yeast.

21 January 2018

1 reference

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

21 January 2018

1 reference

Evolution under fluctuating environments explains observed robustness in metabolic networks

21 January 2018

1 reference

Rewiring of genetic networks in response to DNA damage.

21 January 2018

1 reference

Perspective: Complex Adaptations and the Evolution of Evolvability

21 January 2018

1 reference

Negative epistasis between beneficial mutations in an evolving bacterial population

21 January 2018

1 reference

An integrated view of protein evolution

21 January 2018

1 reference

Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

21 January 2018

1 reference

Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions

21 January 2018

1 reference

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

21 January 2018

1 reference

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

21 January 2018

1 reference

Evolutionary origins of genomic repertoires in bacteria

21 January 2018

1 reference

Evolution of genetic redundancy.

21 January 2018

1 reference

Influence of metabolic network structure and function on enzyme evolution

21 January 2018

1 reference

The distribution of fitness effects of new mutations

21 January 2018

1 reference

Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states

21 January 2018

1 reference

A genome-scale computational study of the interplay between transcriptional regulation and metabolism

21 January 2018

1 reference

Transcriptional regulation in constraints-based metabolic models of Escherichia coli

21 January 2018

1 reference

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

21 January 2018

1 reference

Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes

21 January 2018

1 reference

Chance and necessity in the evolution of minimal metabolic networks

21 January 2018

1 reference

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

21 January 2018

1 reference

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

21 January 2018

1 reference

Metabolic modeling of endosymbiont genome reduction on a temporal scale

21 January 2018

1 reference

The process of genome shrinkage in the obligate symbiont Buchnera aphidicola

21 January 2018

1 reference

A framework for evolutionary systems biology

21 January 2018

1 reference

In silico model-driven assessment of the effects of single nucleotide polymorphisms (SNPs) on human red blood cell metabolism

21 January 2018

1 reference

Comparative systems biology: from bacteria to man.

21 January 2018

1 reference

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis

21 January 2018

1 reference

Comparative methods for explaining adaptations

21 January 2018

1 reference

Network archaeology: uncovering ancient networks from present-day interactions

21 January 2018

1 reference

Environments that induce synthetic microbial ecosystems

21 January 2018

1 reference

Emergent cooperation in microbial metabolism

21 January 2018

1 reference

Large-scale reconstruction and phylogenetic analysis of metabolic environments

21 January 2018

1 reference

Topological signatures of species interactions in metabolic networks

21 January 2018

1 reference

Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets

21 January 2018

1 reference

Programming cells by multiplex genome engineering and accelerated evolution

21 January 2018

1 reference

Avida: a software platform for research in computational evolutionary biology

21 January 2018

1 reference

Digital genetics: unravelling the genetic basis of evolution

21 January 2018

1 reference

Optimality and evolutionary tuning of the expression level of a protein

21 January 2018

1 reference

The yeast cell-cycle network is robustly designed

21 January 2018

1 reference

Using a logical model to predict the growth of yeast

21 January 2018

1 reference

Dynamic flux balance analysis of diauxic growth in Escherichia coli

21 January 2018

1 reference

Evolvability and hierarchy in rewired bacterial gene networks

21 January 2018

1 reference

Neutralism and selectionism: a network-based reconciliation

21 January 2018

1 reference

Evolutionary plasticity and innovations in complex metabolic reaction networks

21 January 2018

1 reference

Enzyme promiscuity: a mechanistic and evolutionary perspective

21 January 2018

1 reference

The locus of evolution: evo devo and the genetics of adaptation

21 January 2018

1 reference

Convergent evolution of gene circuits

21 January 2018

1 reference

Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast

21 January 2018

1 reference

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

21 January 2018

1 reference

Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks.

21 January 2018

1 reference

Modular epistasis in yeast metabolism.

31 March 2020

1 reference

PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY.

31 March 2020

1 reference

High-throughput generation, optimization and analysis of genome-scale metabolic models

31 March 2020

1 reference

Network-based prediction of human tissue-specific metabolism

31 March 2020

1 reference

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

31 March 2020

1 reference

31 March 2020

Underground metabolism

1 reference

Muller's ratchet under epistatic selection

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21808261

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG3033

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25 August 2017

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