(Q38011630)

27 August 2017

title

Advancing formaldehyde cross-linking towards quantitative proteomic applications (English)

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27 August 2017

Cordula Klockenbusch

1

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27 August 2017

Jane E O'Hara

series ordinal

2

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27 August 2017

Juergen Kast

series ordinal

3

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27 August 2017

language of work or name

English

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publication date

19 May 2012

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Analytical and Bioanalytical Chemistry

27 August 2017

published in

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27 August 2017

volume

404

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27 August 2017

issue

4

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27 August 2017

page(s)

1057-1067

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https://scigraph.springernature.com/pub.10.1007/s00216-012-6065-9

27 August 2017

exact match

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cites work

Formaldehyde fixation

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

The use of formalin fixed wax embedded tissue for proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Mass spectrometry-based proteomics in biomedical research: emerging technologies and future strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Quantitative mass spectrometry in proteomics: a critical review

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Identification of formaldehyde-induced modifications in proteins: reactions with model peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Accessibility governs the relative reactivity of basic residues in formaldehyde-induced protein modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Protein fixation and antigen retrieval: chemical studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

A strategy for identifying gel-separated proteins in sequence databases by MS alone.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Reversing the effects of formalin fixation with citraconic anhydride and heat: a universal antigen retrieval method

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Integrating histology and imaging mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Emerging tandem-mass-spectrometry techniques for the rapid identification of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Universal sample preparation method for proteome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Quantitative Proteomic Analysis of Formalin Fixed Paraffin Embedded Oral HPV Lesions from HIV Patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

The current state of chromatin immunoprecipitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Multiple and simultaneous detection of specific bacteria in enriched bacterial communities using a DNA microarray chip with randomly generated genomic DNA probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Genome-wide analysis of estrogen receptor binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Genome-wide mapping of in vivo protein-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Co-immunoprecipitations revisited: an update on experimental concepts and their implementation for sensitive interactome investigations of endogenous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Optimization of formaldehyde cross-linking for protein interaction analysis of non-tagged integrin beta1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Interactome analyses identify ties of PrP and its mammalian paralogs to oligomannosidic N-glycans and endoplasmic reticulum-derived chaperones

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Regions of Escherichia coli TonB and FepA proteins essential for in vivo physical interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Choice of biological source material supersedes oxidative stress in its influence on DJ-1 in vivo interactions with Hsp90.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteomic identification of sorting nexin 6 as a negative regulator of BACE1-mediated APP processing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

xComb: a cross-linked peptide database approach to protein-protein interaction analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Protein identification by spectral networks analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Interactome and interface protocol (2IP): a novel strategy for high sensitivity topology mapping of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteomic analysis of formalin-fixed prostate cancer tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Mapping the local protein interactome of the NuA3 histone acetyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Membrane-SPINE: an improved method to identify protein-protein interaction partners of membrane proteins in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00216-012-6065-9

RETRACTED: Isocratic Method for Affinity Enrichment of Covalently-linked Peptides in Cyanogen Bromide Cleavage of Proteins

21 January 2018

1 reference

3 January 2024

https://opencitations.net/index/api/v1/citations/10.1002/PMIC.201100126

Identifiers

DOI

10.1007/S00216-012-6065-9

1 reference

27 August 2017

1 reference