(Q34074262)

30 July 2017

Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue (English)

1 reference

high-throughput sequencing

30 July 2017

0 references

1 reference

4

Saverio Minucci

1 reference

30 July 2017

Mirco Fanelli

1

1 reference

30 July 2017

Stefano Amatori

series ordinal

2

1 reference

30 July 2017

Iros Barozzi

series ordinal

3

1 reference

30 July 2017

language of work or name

1 reference

10 November 2011

1 reference

30 July 2017

1 reference

30 July 2017

6

1 reference

30 July 2017

1905-1919

1 reference

30 July 2017

12

1 reference

https://scigraph.springernature.com/pub.10.1038/nprot.2011.406

30 July 2017

0 references

cites work

Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

A rapid micro chromatin immunoprecipitation assay (microChIP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Fast genomic muChIP-chip from 1,000 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Immunoprecipitation of native chromatin: NChIP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Advances in understanding cancer genomes through second-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

The epigenomics of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Epigenomic profiling of cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Pathology tissue-chromatin immunoprecipitation, coupled with high-throughput sequencing, allows the epigenetic profiling of patient samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Sense from sequence reads: methods for alignment and assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

SOAP2: an improved ultrafast tool for short read alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

The UCSC Genome Browser database: update 2011

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

PML-RAR induces promyelocytic leukemias with high efficiency following retroviral gene transfer into purified murine hematopoietic progenitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Comparative epigenomic analysis of murine and human adipogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Histone H4 acetylation distinguishes coding regions of the human genome from heterochromatin in a differentiation-dependent but transcription-independent manner.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

Determining the specificity of protein-DNA interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.406

MicroRNA profiling of clear cell renal cell carcinoma by whole-genome small RNA deep sequencing of paired frozen and formalin-fixed, paraffin-embedded tissue specimens.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22082985

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Galaxy: a web-based genome analysis tool for experimentalists

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22082985

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2011.406

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference