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Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space.

scientific article published on 28 June 2012

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Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space (English)

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Kurt Boonen

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Mark G F Sun

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Philip M Kim

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Document classification for mining host pathogen protein-protein interactions

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Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches

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Legionella pneumophila type II protein secretion promotes virulence in the A/J mouse model of Legionnaires' disease pneumonia

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Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems

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Emerging theme: cellular PDZ proteins as common targets of pathogenic viruses

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Human immunodeficiency virus type 1, human protein interaction database at NCBI.

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Identification of cellular factors binding to acetylated HIV-1 integrase.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Hepatitis C virus infection protein network

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Network based analysis of hepatitis C virus core and NS4B protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Herpesviral protein networks and their interaction with the human proteome

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Evolutionarily conserved herpesviral protein interaction networks

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Epstein-Barr virus and virus human protein interaction maps

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

System-level comparison of protein-protein interactions between viruses and the human type I interferon system network

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

HIV protein sequence hotspots for crosstalk with host hub proteins

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Topology and weights in a protein domain interaction network--a novel way to predict protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

A small molecule Smac mimic potentiates TRAIL- and TNFalpha-mediated cell death

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Inhibition of Wnt signaling by Dishevelled PDZ peptides

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Systematic review of influenza resistance to the neuraminidase inhibitors

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Systems biology and the host response to viral infection

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Network medicine

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

Legionella pneumophila contains a type II general secretion pathway required for growth in amoebae as well as for secretion of the Msp protease

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2012.06.011

7 January 2021

based on heuristic

inferred from DOI database lookup

Prediction of signal peptides and signal anchors by a hidden Markov model.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22750305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete general secretory pathway in gram-negative bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/22750305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22750305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Small-molecule antagonists of p53-MDM2 binding: research tools and potential therapeutics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22750305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Dot/Icm-translocated ankyrin protein of Legionella pneumophila is required for intracellular proliferation within human macrophages and protozoa.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22750305

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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