(Q38037195)

27 August 2017

title

Recent work in the development and application of protein-peptide docking (English)

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27 August 2017

Joseph Audie

1

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27 August 2017

Jon Swanson

series ordinal

2

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27 August 2017

publication date

1 August 2012

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Future Medicinal Chemistry

27 August 2017

published in

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27 August 2017

volume

4

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27 August 2017

issue

12

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27 August 2017

page(s)

1619-1644

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Synthetic therapeutic peptides: science and market

27 August 2017

cites work

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Emerging peptide therapeutics for inflammatory autoimmune diseases

21 January 2018

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Peptide drugs to target G protein-coupled receptors

21 January 2018

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Engineered conformation-dependent VEGF peptide mimics are effective in inhibiting VEGF signaling pathways

21 January 2018

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In vitro methods for peptide display and their applications

21 January 2018

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Selective inhibition of matrix metalloproteinase-14 blocks tumor growth, invasion, and angiogenesis.

21 January 2018

1 reference

mRNA Display Selection of an Optimized MDM2-Binding Peptide That Potently Inhibits MDM2-p53 Interaction

21 January 2018

1 reference

High-throughput screening of one-bead-one-compound libraries: identification of cyclic peptidyl inhibitors against calcineurin/NFAT interaction.

21 January 2018

1 reference

The synergistic use of computation, chemistry and biology to discover novel peptide-based drugs: the time is right

21 January 2018

1 reference

DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases

21 January 2018

1 reference

eHiTS: an innovative approach to the docking and scoring function problems.

21 January 2018

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Protein-protein docking tested in blind predictions: the CAPRI experiment

21 January 2018

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Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database.

21 January 2018

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SKATE: a docking program that decouples systematic sampling from scoring

21 January 2018

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What is a desirable statistical energy function for proteins and how can it be obtained?

21 January 2018

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A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes

21 January 2018

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A novel empirical free energy function that explains and predicts protein-protein binding affinities.

21 January 2018

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Force fields for protein simulations

21 January 2018

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Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs

21 January 2018

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Development and validation of an empirical free energy function for calculating protein-protein binding free energy surfaces

21 January 2018

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Continued development of an empirical function for predicting and rationalizing protein-protein binding affinities.

21 January 2018

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Knowledge-based potentials for proteins

21 January 2018

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A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.

21 January 2018

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Knowledge-based scoring functions in drug design. 1. Developing a target-specific method for kinase-ligand interactions.

21 January 2018

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On the analysis of protein-protein interactions via knowledge-based potentials for the prediction of protein-protein docking

21 January 2018

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Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential.

21 January 2018

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Phage display screening against a set of targets to establish peptide-based sugar mimetics and molecular docking to predict binding site.

21 January 2018

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Molecular dynamics simulations and in silico peptide ligand screening of the Elk-1 ETS domain.

21 January 2018

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Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential

21 January 2018

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A new peptide docking strategy using a mean field technique with mutually orthogonal Latin square sampling.

21 January 2018

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All-atom Monte Carlo approach to protein-peptide binding

21 January 2018

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DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.

21 January 2018

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Docking flexible peptide to flexible protein by molecular dynamics using two implicit-solvent models: an evaluation in protein kinase and phosphatase systems

21 January 2018

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Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors

21 January 2018

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Structural and dynamic determinants of protein-peptide recognition

21 January 2018

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Prediction of peptides binding to the PKA RIIalpha subunit using a hierarchical strategy

21 January 2018

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Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xL.

21 January 2018

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Peptide ligand screening of alpha-synuclein aggregation modulators by in silico panning

21 January 2018

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Novel peptide ligand directs liposomes toward EGF-R high-expressing cancer cells in vitro and in vivo

21 January 2018

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Identification of structural mechanisms of HIV-1 protease specificity using computational peptide docking: implications for drug resistance

21 January 2018

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Structure-based design of a heptavalent anthrax toxin inhibitor.

21 January 2018

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Synthesis, biological evaluation, and automated docking of constrained analogues of the opioid peptide H-Dmt-D-Ala-Phe-Gly-NH₂ using the 4- or 5-methyl substituted 4-amino-1,2,4,5-tetrahydro-2-benzazepin-3-one scaffold

21 January 2018

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21 January 2018

Identifiers

DOI

10.4155/FMC.12.99

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27 August 2017

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