(Q38103941)

28 August 2017

Pneumonia pathogen detection and microbial interactions in polymicrobial episodes (English)

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28 August 2017

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2

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28 August 2017

3

Bernard La Scola

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28 August 2017

1

Sabri Bousbia

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28 August 2017

1 May 2013

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28 August 2017

28

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based on heuristic

inferred from page(s)

published in

Future Microbiology

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28 August 2017

8

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28 August 2017

633-660

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28 August 2017

5

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Nosocomial infections in adult intensive-care units

28 August 2017

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The prevalence of nosocomial infection in intensive care units in Europe. Results of the European Prevalence of Infection in Intensive Care (EPIC) Study. EPIC International Advisory Committee

21 January 2018

1 reference

Guidelines for the Management of Adults with Hospital-acquired, Ventilator-associated, and Healthcare-associated Pneumonia

21 January 2018

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Ventilator-associated pneumonia

21 January 2018

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Ventilator associated pneumonia and infection control

21 January 2018

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Bronchoscopic BAL in the diagnosis of ventilator-associated pneumonia

21 January 2018

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Tropheryma whipplei in patients with pneumonia

21 January 2018

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Severe pneumonia with Leptotrichia sp. detected predominantly in bronchoalveolar lavage fluid by use of 16S rRNA gene sequencing analysis

21 January 2018

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Molecular analysis of oral and respiratory bacterial species associated with ventilator-associated pneumonia

21 January 2018

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Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis

21 January 2018

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Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing

21 January 2018

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Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patients

21 January 2018

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Repertoire of intensive care unit pneumonia microbiota

21 January 2018

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Ameba-associated microorganisms and diagnosis of nosocomial pneumonia

21 January 2018

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Evidence from multiplex molecular assays for complex multipathogen interactions in acute respiratory infections

21 January 2018

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A prospective study of the diagnostic utility of sputum Gram stain in pneumonia

21 January 2018

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Microbial investigation in ventilator-associated pneumonia

21 January 2018

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Microscopic examination of intracellular organisms in protected bronchoalveolar mini-lavage fluid for the diagnosis of ventilator-associated pneumonia.

21 January 2018

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The argument against using quantitative cultures in clinical trials and for the management of ventilator-associated pneumonia

21 January 2018

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Comparison of BacT/ALERT 3D, Lowenstein-Jensen medium and Middlebrook 7H10/7H11 biplate for recovering mycobacteria from clinical specimens.

21 January 2018

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Blood cultures: clinical aspects and controversies

21 January 2018

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Incidence and outcome of polymicrobial ventilator-associated pneumonia.

21 January 2018

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Polymicrobial bloodstream infections involving Candida species: analysis of patients and review of the literature.

21 January 2018

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Limited utility of culture for Mycoplasma pneumoniae and Chlamydophila pneumoniae for diagnosis of respiratory tract infections

21 January 2018

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Bacterial identification for publication: when is enough enough?

21 January 2018

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Enhanced detection of respiratory viruses using cryopreserved R-Mix ReadyCells

21 January 2018

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Biodiversity of amoebae and amoeba-resisting bacteria in a hospital water network

21 January 2018

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Amoebae as training grounds for intracellular bacterial pathogens

21 January 2018

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Parachlamydia acanthamoebae enters and multiplies within human macrophages and induces their apoptosis [corrected].

21 January 2018

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Parachlamydia acanthamoebae enters and multiplies within pneumocytes and lung fibroblasts

21 January 2018

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Parachlamydia acanthamoebae, an emerging agent of pneumonia

21 January 2018

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21 January 2018

A giant virus in amoebae

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Isolation and identification of amoeba-resisting bacteria from water in human environment by using an Acanthamoeba polyphaga co-culture procedure.

21 January 2018

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Isolation of Legionella pneumophila from clinical specimens via amoebae, and the interaction of those and other isolates with amoebae

21 January 2018

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Amoebae-resisting bacteria isolated from human nasal swabs by amoebal coculture

21 January 2018

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Amoeba co-culture of soil specimens recovered 33 different bacteria, including four new species and Streptococcus pneumoniae

21 January 2018

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Isolation of Legionella anisa using an amoebic coculture procedure

21 January 2018

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Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia

21 January 2018

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Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry

21 January 2018

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MALDI-TOF-mass spectrometry applications in clinical microbiology

21 January 2018

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Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells

21 January 2018

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Detection of microorganisms in blood specimens using matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a review

21 January 2018

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Direct identification of bacteria in positive blood culture bottles by matrix-assisted laser desorption ionisation time-of-flight mass spectrometry

21 January 2018

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Direct identification of urinary tract pathogens from urine samples by matrix-assisted laser desorption ionization-time of flight mass spectrometry.

21 January 2018

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Direct identification of bacteria in urine samples by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and relevance of defensins as interfering factors

21 January 2018

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Intact cell mass spectrometry (ICMS) used to type methicillin-resistant Staphylococcus aureus: media effects and inter-laboratory reproducibility

21 January 2018

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Application of protein microarrays for multiplexed detection of antibodies to tumor antigens in breast cancer

21 January 2018

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Comparison of the new InoDiag automated fluorescence multiplexed antigen microarray to the reference technique in the serodiagnosis of atypical bacterial pneumonia

21 January 2018

1 reference

A protein microarray immunoassay for the serological evaluation of the antibody response in vertically transmitted infections

21 January 2018

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Serological microarray for detection of HSV-1, HSV-2, VZV, and CMV antibodies.

21 January 2018

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High-throughput analysis of serum antigens using sandwich ELISAs on microarrays

21 January 2018

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Comparison of multiplexed techniques for detection of bacterial and viral proteins.

21 January 2018

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A higher significance of anaerobes: the clone library analysis of bacterial pleurisy

21 January 2018

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Impact of rapid detection of viral and atypical bacterial pathogens by real-time polymerase chain reaction for patients with lower respiratory tract infection.

21 January 2018

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PCR-based diagnosis of human fungal infections

21 January 2018

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Development of broad-range 16S rDNA PCR for use in the routine diagnostic clinical microbiology service.

21 January 2018

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A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria

21 January 2018

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Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories.

21 January 2018

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Use of the MicroSeq 500 16S rRNA gene-based sequencing for identification of bacterial isolates that commercial automated systems failed to identify correctly.

21 January 2018

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PCR methods for the rapid detection and identification of four pathogenic Legionella spp. and two Legionella pneumophila subspecies based on the gene amplification of gyrB.

21 January 2018

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Diversity of SCCmec elements in methicillin-resistant coagulase-negative staphylococci clinical isolates

21 January 2018

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Identification of the cpsA gene as a specific marker for the discrimination of Streptococcus pneumoniae from viridans group streptococci.

21 January 2018

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Bacterial strain typing in the genomic era.

21 January 2018

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Molecular detection of antimicrobial resistance

21 January 2018

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Disordered microbial communities in asthmatic airways

21 January 2018

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Analysis of the lung microbiome in the "healthy" smoker and in COPD

21 January 2018

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The lung tissue microbiome in chronic obstructive pulmonary disease

21 January 2018

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Spatial distribution of microbial communities in the cystic fibrosis lung

21 January 2018

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Topographical continuity of bacterial populations in the healthy human respiratory tract

21 January 2018

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The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management

21 January 2018

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Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant.

21 January 2018

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Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches

21 January 2018

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Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

21 January 2018

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Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

21 January 2018

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Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing

21 January 2018

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A bioinformatician's guide to metagenomics

21 January 2018

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Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota

21 January 2018

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Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses.

21 January 2018

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Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses

21 January 2018

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A microbial detection array (MDA) for viral and bacterial detection

21 January 2018

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High-density microarray of small-subunit ribosomal DNA probes

21 January 2018

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Oligonucleotide microarrays for identification of microbial pathogens and detection of their virulence-associated or drug-resistance determinants

21 January 2018

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Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases

21 January 2018

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Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray

21 January 2018

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Application of broad-spectrum, sequence-based pathogen identification in an urban population

21 January 2018

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A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

21 January 2018

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Microarray-based detection and genotyping of viral pathogens

21 January 2018

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Experimental evaluation of the FluChip diagnostic microarray for influenza virus surveillance

21 January 2018

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Comparison of the MChip to viral culture, reverse transcription-PCR, and the QuickVue influenza A+B test for rapid diagnosis of influenza

21 January 2018

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Respiratory viruses in children admitted to hospital intensive care units: evaluating the CLART® Pneumovir DNA array

21 January 2018

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Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia

21 January 2018

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Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children

21 January 2018

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Detection of nine respiratory RNA viruses using three multiplex RT-PCR assays incorporating a novel RNA internal control transcript

21 January 2018

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The pneumoplex assays, a multiplex PCR-enzyme hybridization assay that allows simultaneous detection of five organisms, Mycoplasma pneumoniae, Chlamydia (Chlamydophila) pneumoniae, Legionella pneumophila, Legionella micdadei, and Bordetella pertussi

21 January 2018

1 reference

Multiplex quantitative PCR for detection of lower respiratory tract infection and meningitis caused by Streptococcus pneumoniae, Haemophilus influenzae and Neisseria meningitidis

21 January 2018

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Quadruplex real-time quantitative PCR assay for the detection of pathogens related to late-onset ventilator-associated pneumonia: a preliminary report.

21 January 2018

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Multiplex PCR using internal transcribed spacer 1 and 2 regions for rapid detection and identification of yeast strains

21 January 2018

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Multiplex PCR and emerging technologies for the detection of respiratory pathogens

21 January 2018

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Evaluation of multiple commercial molecular and conventional diagnostic assays for the detection of respiratory viruses in children

21 January 2018

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Duplex real-time PCR assay for detection of Streptococcus pneumoniae in clinical samples and determination of penicillin susceptibility

21 January 2018

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A multiplex real-time PCR assay for rapid detection and differentiation of 25 bacterial and fungal pathogens from whole blood samples

21 January 2018

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Preliminary clinical study using a multiplex real-time PCR test for the detection of bacterial and fungal DNA directly in blood.

21 January 2018

1 reference

Rapid qualitative urinary tract infection pathogen identification by SeptiFast real-time PCR.

21 January 2018

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Real-world comparison of two molecular methods for detection of respiratory viruses

21 January 2018

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Species interactions in a parasite community drive infection risk in a wildlife population

21 January 2018

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Impact of antimicrobial therapy on nasopharyngeal carriage of Streptococcus pneumoniae, Haemophilus influenzae, and Branhamella catarrhalis in children with respiratory tract infections.

21 January 2018

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Effect of conjugate pneumococcal vaccine followed by polysaccharide pneumococcal vaccine on recurrent acute otitis media: a randomised study.

21 January 2018

1 reference

Microbial interactions during upper respiratory tract infections

21 January 2018

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Implications of endotracheal tube biofilm for ventilator-associated pneumonia.

21 January 2018

1 reference

Quorum sensing and biofilm formation in Streptococcal infections

21 January 2018

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Bacterial biofilms: a common cause of persistent infections

21 January 2018

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Quorum sensing-dependent virulence during Pseudomonas aeruginosa colonisation and pneumonia in mechanically ventilated patients

21 January 2018

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The concomitant development of poly(vinyl chloride)-related biofilm and antimicrobial resistance in relation to ventilator-associated pneumonia

21 January 2018

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Macrolides and community-acquired pneumonia: is quorum sensing the key?

21 January 2018

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Pseudomonas aeruginosa induces localized immunosuppression during pneumonia

21 January 2018

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Selection for Staphylococcus aureus small-colony variants due to growth in the presence of Pseudomonas aeruginosa

21 January 2018

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Respiratory viruses augment the adhesion of bacterial pathogens to respiratory epithelium in a viral species- and cell type-dependent manner.

21 January 2018

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Influenza virus infection decreases tracheal mucociliary velocity and clearance of Streptococcus pneumoniae

21 January 2018

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Dysregulated macrophage-inflammatory protein-2 expression drives illness in bacterial superinfection of influenza

21 January 2018

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Role of neuraminidase in lethal synergism between influenza virus and Streptococcus pneumoniae

21 January 2018

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Pandemic Influenza and Pneumonia Due toLegionella pneumophila:A Frequently Underestimated Coinfection

21 January 2018

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Impact of human metapneumovirus and respiratory syncytial virus co-infection in severe bronchiolitis

21 January 2018

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Human metapneumovirus in severe respiratory syncytial virus bronchiolitis

21 January 2018

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Dual infection of infants by human metapneumovirus and human respiratory syncytial virus is strongly associated with severe bronchiolitis.

21 January 2018

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High incidence of pulmonary bacterial co-infection in children with severe respiratory syncytial virus (RSV) bronchiolitis

21 January 2018

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Sepsis induces early alterations in innate immunity that impact mortality to secondary infection

21 January 2018

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Cirrhosis-induced defects in innate pulmonary defenses against Streptococcus pneumoniae

21 January 2018

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Pseudomonas aeruginosa pyocyanin and 1-hydroxyphenazine inhibit fungal growth

21 January 2018

1 reference

Interference between Streptococcus pneumoniae and Staphylococcus aureus: In vitro hydrogen peroxide-mediated killing by Streptococcus pneumoniae

21 January 2018

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Streptococcal antagonism in oral biofilms: Streptococcus sanguinis and Streptococcus gordonii interference with Streptococcus mutans

21 January 2018

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Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria

21 January 2018

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Hydrogen peroxide-mediated interference competition by Streptococcus pneumoniae has no significant effect on Staphylococcus aureus nasal colonization of neonatal rats

21 January 2018

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Prokaryote-eukaryote interactions identified by using Caenorhabditis elegans

21 January 2018

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Pseudomonas-Candida interactions: an ecological role for virulence factors

21 January 2018

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A Pseudomonas aeruginosa quorum-sensing molecule influences Candida albicans morphology

21 January 2018

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Anticandidal activity of Pseudomonas aeruginosa strains isolated from clinical specimens.

21 January 2018

1 reference

Microbiota regulates immune defense against respiratory tract influenza A virus infection

21 January 2018

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Microbial communities of the upper respiratory tract and otitis media in children

21 January 2018

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Bordetella pertussis infection exacerbates influenza virus infection through pertussis toxin-mediated suppression of innate immunity

21 January 2018

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Infection with human coronavirus NL63 enhances streptococcal adherence to epithelial cells

21 January 2018

1 reference

Influenza A virus neuraminidase enhances meningococcal adhesion to epithelial cells through interaction with sialic acid-containing meningococcal capsules

21 January 2018

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Influenza A virus facilitates Streptococcus pneumoniae transmission and disease

21 January 2018

1 reference

Lethal synergism between influenza virus and Streptococcus pneumoniae: characterization of a mouse model and the role of platelet-activating factor receptor

21 January 2018

1 reference

The Streptococcus pyogenes capsule is required for adhesion of bacteria to virus-infected alveolar epithelial cells and lethal bacterial-viral superinfection

21 January 2018

1 reference

Viral hemagglutinin is involved in promoting the internalisation of Staphylococcus aureus into human pneumocytes during influenza A H1N1 virus infection

21 January 2018

1 reference

Co-infection of Influenza B and Streptococci causing severe pneumonia and septic shock in healthy women

21 January 2018

1 reference

Infection with human metapneumovirus predisposes mice to severe pneumococcal pneumonia

21 January 2018

1 reference

Nontypeable Haemophilus influenzae and Streptococcus pneumoniae bind respiratory syncytial virus glycoprotein

21 January 2018

1 reference

RSV mediates Pseudomonas aeruginosa binding to cystic fibrosis and normal epithelial cells

21 January 2018

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Effect of interactions between lower airway bacterial and rhinoviral infection in exacerbations of COPD.

21 January 2018

1 reference

Effects of rhinovirus infection on the adherence of Streptococcus pneumoniae to cultured human airway epithelial cells

21 January 2018

1 reference

The role of innate immune responses in the outcome of interspecies competition for colonization of mucosal surfaces

21 January 2018

1 reference

Pseudomonas aeruginosa extracellular products inhibit staphylococcal growth, and disrupt established biofilms produced by Staphylococcus epidermidis.

21 January 2018

1 reference

Killing of Candida albicans filaments by Salmonella enterica serovar Typhimurium is mediated by sopB effectors, parts of a type III secretion system

21 January 2018

1 reference

Inhibition of growth of fungi pathogenic to man by Stenotrophomonas maltophilia.

21 January 2018

1 reference

SO-LAAO, a novel L-amino acid oxidase that enables Streptococcus oligofermentans to outcompete Streptococcus mutans by generating H2O2 from peptone

21 January 2018

1 reference

Pneumocystis infection enhances antibody-mediated resistance to a subsequent influenza infection

21 January 2018

1 reference

Serological microarray for a paradoxical diagnostic of Whipple’s disease

21 January 2018

1 reference

Rapid multiplex reverse transcription-PCR typing of influenza A and B virus, and subtyping of influenza A virus into H1, 2, 3, 5, 7, 9, N1 (human), N1 (animal), N2, and N7, including typing of novel swine origin influenza A (H1N1) virus, during the 2

21 January 2018

1 reference

Human Cytomegalovirus Enhances A. actinomycetemcomitans Adherence to Cells

21 January 2018

1 reference

Rhinoviruses promote internalisation of Staphylococcus aureus into non-fully permissive cultured pneumocytes

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.2217/FMB.13.26

1 reference

28 August 2017

1 reference

PubMed ID

23642118