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A Review of Computational Tools in microRNA Discovery.
scientific article published on 15 May 2013
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Europe PubMed Central
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2 March 2020
title
A Review of Computational Tools in microRNA Discovery
(English)
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Europe PubMed Central
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2 March 2020
main subject
microRNA
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author
Clarissa P C Gomes
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1
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2 March 2020
Octávio Luiz Franco
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4
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2 March 2020
Rinaldo Wellerson Pereira
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5
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2 March 2020
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Ji-Hoon Cho
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2 March 2020
Kai Wang
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6
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2 March 2020
Leroy Hood
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3
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publication date
15 May 2013
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2 March 2020
published in
Frontiers in Genetics
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2 March 2020
volume
4
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2 March 2020
page(s)
81
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2 March 2020
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Phylogenetic shadowing and computational identification of human microRNA genes
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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
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The Microprocessor complex mediates the genesis of microRNAs
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An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues
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MicroRNAs: genomics, biogenesis, mechanism, and function
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Computational identification of Drosophila microRNA genes
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Vienna RNA secondary structure server
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Mfold web server for nucleic acid folding and hybridization prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Computational and experimental identification of C. elegans microRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
The microRNAs of Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
A uniform system for microRNA annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
MicroRNA maturation: stepwise processing and subcellular localization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
MicroRNAs in plants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Identification of tissue-specific microRNAs from mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
An extensive class of small RNAs in Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Identification of novel genes coding for small expressed RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
6 September 2017
Detection of mammalian microRNA expression by in situ hybridization with RNA oligonucleotides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
14 September 2017
Computational methods for ab initio detection of microRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
23 June 2018
MicroRNA: Biogenesis, Function and Role in Cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
23 June 2018
Learning from positive examples when the negative class is undetermined--microRNA gene identification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
23 June 2018
Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
31 August 2018
microPred: effective classification of pre-miRNAs for human miRNA gene prediction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
31 August 2018
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
31 August 2018
PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
31 August 2018
MicroRNA identification based on sequence and structure alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3654206
retrieved
31 August 2018
In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23720668
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.3389/FGENE.2013.00081
1 reference
stated in
Europe PubMed Central
PMCID
3654206
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23720668%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PMCID
3654206
1 reference
stated in
Europe PubMed Central
PMCID
3654206
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23720668%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
PubMed ID
23720668
1 reference
stated in
Europe PubMed Central
PMCID
3654206
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23720668%20AND%20SRC:MED&resulttype=core&format=json
retrieved
2 March 2020
ResearchGate publication ID
236968833
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