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Regulation of natural mRNAs by the nonsense-mediated mRNA decay pathway
scientific article published on 18 July 2014
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scholarly article
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stated in
Europe PubMed Central
PMCID
4187617
retrieved
31 August 2017
title
Regulation of natural mRNAs by the nonsense-mediated mRNA decay pathway
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4187617
retrieved
31 August 2017
author
Bessie W. Kebaara
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
author name string
Megan Peccarelli
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
publication date
18 July 2014
1 reference
stated in
Europe PubMed Central
PMCID
4187617
retrieved
31 August 2017
published in
Eukaryotic Cell
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
volume
13
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
issue
9
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
page(s)
1126-1135
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
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Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation
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Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast
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Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1
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Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay
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Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans
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Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
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SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
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The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
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retrieved
6 September 2017
Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1- mutant
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
Compilation and comparison of the sequence context around the AUG startcodons in Saccharomyces cerevisiae mRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
A new kind of informational suppression in the nematode Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
NAM7 nuclear gene encodes a novel member of a family of helicases with a Zn-ligand motif and is involved in mitochondrial functions in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
6 September 2017
Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
14 September 2017
Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
14 September 2017
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
14 September 2017
Nonsense-mediated mRNA decay mutation in Aspergillus nidulans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
28 September 2017
Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
28 September 2017
eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
23 June 2018
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
23 June 2018
Widespread impact of nonsense-mediated mRNA decay on the yeast intronome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
23 June 2018
Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
23 June 2018
Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
Mobilization of intracellular copper stores by the ctr2 vacuolar copper transporter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
Computational modeling and experimental analysis of nonsense-mediated decay in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
Purification and characterization of the Upf1 protein: a factor involved in translation and mRNA degradation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
31 August 2018
Nonsense-mediated mRNA decay: target genes and functional diversification of effectors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4187617
retrieved
3 December 2018
Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25038084
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Translational control of intron splicing in eukaryotes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25038084
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25038084
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
[Context organization of mRNA 5'-untranslated regions of higher plants]
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25038084
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/EC.00090-14
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
PMCID
4187617
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
PubMed ID
25038084
1 reference
stated in
Europe PubMed Central
PMCID
4187617
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25038084%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 June 2020
ResearchGate publication ID
264056484
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