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The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
title
The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
main subject
Escherichia coli
0 references
author
Tomohiro Shimada
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
Stephen Busby
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
David C Grainger
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
author name string
Akira Ishihama
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
language of work or name
English
0 references
publication date
30 May 2008
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
volume
36
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
page(s)
3950-3955
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
issue
12
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
cites work
Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
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6 September 2017
RutR is the uracil/thymine-sensing master regulator of a set of genes for synthesis and degradation of pyrimidines.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Comparative analysis of regulatory motif discovery tools for transcription factor binding sites
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PubMed Central
reference URL
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6 September 2017
Genomic analysis of protein-DNA interactions in bacteria: insights into transcription and chromosome organization
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Transcription factor distribution in Escherichia coli: studies with FNR protein.
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PubMed Central
reference URL
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6 September 2017
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.
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6 September 2017
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
A previously undescribed pathway for pyrimidine catabolism
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PubMed Central
reference URL
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6 September 2017
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.
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PubMed Central
reference URL
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6 September 2017
In silico representation and discovery of transcription factor binding sites
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
The regulation of bacterial transcription initiation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Identifying global regulators in transcriptional regulatory networks in bacteria
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
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6 September 2017
Identification of the binding sites of regulatory proteins in bacterial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
6 September 2017
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
6 September 2017
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
6 September 2017
Evolution of transcription factors and the gene regulatory network in Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
14 September 2017
PREDetector: a new tool to identify regulatory elements in bacterial genomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
31 August 2018
Functional determinants of transcription factors in Escherichia coli: protein families and binding sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2475637
retrieved
31 August 2018
Identifiers
DOI
10.1093/NAR/GKN339
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
PMCID
2475637
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
PubMed ID
18515344
1 reference
stated in
Europe PubMed Central
PMCID
2475637
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18515344%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 January 2020
ResearchGate publication ID
5336356
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