(Q38297735)

1 September 2017

Thermodynamics of specific and nonspecific DNA binding by two DNA-binding domains conjugated to fluorescent probes (English)

1 reference

1 September 2017

Thompson M

1

1 reference

1 September 2017

Woodbury NW

series ordinal

2

1 reference

1 September 2017

language of work or name

English

0 references

publication date

1 September 2001

1 reference

1 September 2017

12

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

1 September 2017

81

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1 September 2017

3

1 reference

1 September 2017

1793-1804

1 reference

Energetics of DNA intercalation reactions

1 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Participation of water in Hin recombinase--DNA recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Transposase is the only nematode protein required for in vitro transposition of Tc1.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

The Tc1/mariner transposon family

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamics of ligand binding to trp repressor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Coupling of local folding to site-specific binding of proteins to DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

A thermodynamic study of the trp repressor-operator interaction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Synthetic alpha-helical peptides incorporating intercalators for DNA recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

The operator-binding domain of lambda repressor: structure and DNA recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Temperature dependence of the hydrophobic interaction in protein folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Stability of protein structure and hydrophobic interaction.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Orientation of the Lac repressor DNA binding domain in complex with the left lac operator half site characterized by affinity cleaving

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Sequence-specific interaction of the Salmonella Hin recombinase in both major and minor grooves of DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamics of Cro protein-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Transcription factors: structural families and principles of DNA recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Chemical synthesis of peptides and proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Water and proteins. I. The significance and structure of water; its interaction with electrolytes and non-electrolytes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

A purified mariner transposase is sufficient to mediate transposition in vitro

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

On the application of polyelectrolyte "limiting laws" to the helix-coil transition of DNA. I. Excess univalent cations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Synthesis of a sequence-specific DNA-cleaving peptide

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Interaction of the Escherichia coli Gal repressor protein with its DNA operators in vitro.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Ion effects on ligand-nucleic acid interactions

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Crystal structure of the specific DNA-binding domain of Tc3 transposase of C.elegans in complex with transposon DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301654

Binding of a distamycin-ellipticine hybrid molecule to DNA and chromatin: spectroscopic, biochemical, and molecular modeling investigations

31 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Synthesis of a site-specific DNA-binding peptide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Specificity of the binding of bacteriophage M13 encoded gene-5 protein to DNA and RNA studied by means of fluorescence titrations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Chemical synthesis of deoxyoligonucleotides by the phosphoramidite method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Structure, thermodynamics and cooperativity of the glucocorticoid receptor DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation studies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Eukaryotic transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Limiting Laws and Counterion Condensation in Polyelectrolyte Solutions I. Colligative Properties

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

DNA recognition by metal-peptide complexes containing the recognition helix of the phage 434 repressor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Fluorescent and photochemical properties of a single zinc finger conjugated to a fluorescent DNA-binding probe

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975830-4

Calorimetric analysis of lambda cI repressor binding to DNA operator sites

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11509389

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(01)75830-4

1 reference

1 September 2017

1 reference

1 September 2017

PubMed publication ID

11509389

1 reference