(Q38304507)

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Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres

scientific article published on 02 September 2014

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scholarly article

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Europe PubMed Central

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1 September 2017

Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres (English)

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PMC publication ID

1 September 2017

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31 May 2020

1

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31 May 2020

Laura S Burrack

5

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31 May 2020

author name string

Joshua A Baller

2

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31 May 2020

Ivan Liachko

3

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31 May 2020

Amnon Koren

4

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31 May 2020

Meleah A Hickman

6

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31 May 2020

Mathuravani A Thevandavakkam

7

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31 May 2020

Laura N Rusche

8

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31 May 2020

publication date

2 September 2014

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1 September 2017

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31 May 2020

5

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31 May 2020

5

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31 May 2020

e01703-14

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31 May 2020

Rad51-Rad52 mediated maintenance of centromeric chromatin in Candida albicans

1 reference

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GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris

1 reference

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6 September 2017

High-resolution analysis of DNA synthesis start sites and nucleosome architecture at efficient mammalian replication origins.

1 reference

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6 September 2017

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.

1 reference

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6 September 2017

Maintaining replication origins in the face of genomic change

1 reference

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6 September 2017

Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae

1 reference

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6 September 2017

Genome-wide identification and characterization of replication origins by deep sequencing

1 reference

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Novel features of ARS selection in budding yeast Lachancea kluyveri

1 reference

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6 September 2017

OriDB, the DNA replication origin database updated and extended

1 reference

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6 September 2017

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features

1 reference

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6 September 2017

Chromatin signatures of the Drosophila replication program

1 reference

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6 September 2017

Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure

1 reference

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6 September 2017

Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase

1 reference

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6 September 2017

Regularization Paths for Generalized Linear Models via Coordinate Descent

1 reference

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6 September 2017

The role of nucleosome positioning in the evolution of gene regulation

1 reference

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6 September 2017

A comprehensive genome-wide map of autonomously replicating sequences in a naive genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Conserved nucleosome positioning defines replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication

1 reference

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6 September 2017

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Transcriptional analysis of the Candida albicans cell cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

MEME SUITE: tools for motif discovery and searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Neocentromeres form efficiently at multiple possible loci in Candida albicans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Replication in context: dynamic regulation of DNA replication patterns in metazoans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

The many faces of the origin recognition complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

The spatial arrangement of ORC binding modules determines the functionality of replication origins in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

DNA replication origins in the Schizosaccharomyces pombe genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

DNA sequence and functional analysis of homologous ARS elements of Saccharomyces cerevisiae and S. carlsbergensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Rapid hypothesis testing with Candida albicans through gene disruption with short homology regions.

1 reference

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6 September 2017

The ARS309 chromosomal replicator of Saccharomyces cerevisiae depends on an exceptional ARS consensus sequence.

1 reference

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Architecture of the yeast origin recognition complex bound to origins of DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

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Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe

1 reference

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The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators

1 reference

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Autonomously replicating sequences in Saccharomyces cerevisiae

1 reference

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1 reference

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The localization of replication origins on ARS plasmids in S. cerevisiae

1 reference

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ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

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1 reference

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6 September 2017

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1 reference

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6 September 2017

Two compound replication origins in Saccharomyces cerevisiae contain redundant origin recognition complex binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4173791

6 September 2017

Single-copy IMH3 allele is sufficient to confer resistance to mycophenolic acid in Candida albicans and to mediate transformation of clinical Candida species

1 reference

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Intergenic DNA and the sequence requirements for replication initiation in eukaryotes

1 reference

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Development of autonomously replicating plasmids for Candida albicans

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Replication origins run (ultra) deep

1 reference

https://pubmed.ncbi.nlm.nih.gov/25182328

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MBIO.01703-14

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25182328%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25182328%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25182328%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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