(Q38311310)

2 September 2017

Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques. (English)

1 reference

2 September 2017

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

John P Thomson

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Jennifer M Hunter

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Colm E Nestor

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Donncha S Dunican

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Rémi Terranova

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Jonathan G Moggs

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

language of work or name

English

0 references

publication date

7 November 2013

1 reference

2 September 2017

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

e206

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

6 June 2020

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3905904

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency

1 reference

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Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos

6 September 2017

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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

6 September 2017

1 reference

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Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

6 September 2017

1 reference

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Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes

6 September 2017

1 reference

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5-Hydroxymethylcytosine: generation, fate, and genomic distribution

6 September 2017

1 reference

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Non-canonical functions of the DNA methylome in gene regulation

6 September 2017

1 reference

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Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method

6 September 2017

1 reference

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High-resolution enzymatic mapping of genomic 5-hydroxymethylcytosine in mouse embryonic stem cells

6 September 2017

1 reference

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Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development

6 September 2017

1 reference

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Mapping recently identified nucleotide variants in the genome and transcriptome

6 September 2017

1 reference

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Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome

6 September 2017

1 reference

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Tet2 facilitates the derepression of myeloid target genes during CEBPα-induced transdifferentiation of pre-B cells

6 September 2017

1 reference

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Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma

6 September 2017

1 reference

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Promoter DNA methylation couples genome-defence mechanisms to epigenetic reprogramming in the mouse germline

6 September 2017

1 reference

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Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers

6 September 2017

1 reference

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Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

6 September 2017

1 reference

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Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

6 September 2017

1 reference

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Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.

6 September 2017

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

6 September 2017

1 reference

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DNA methylation status predicts cell type-specific enhancer activity.

6 September 2017

1 reference

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5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

6 September 2017

1 reference

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Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

6 September 2017

1 reference

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A user's guide to the encyclopedia of DNA elements (ENCODE)

6 September 2017

1 reference

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TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

6 September 2017

1 reference

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Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

6 September 2017

1 reference

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Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

6 September 2017

1 reference

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Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

6 September 2017

1 reference

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Genomic mapping of 5-hydroxymethylcytosine in the human brain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation

6 September 2017

1 reference

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Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

DNA methylation patterns and epigenetic memory

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

5-Hydroxymethylcytosine: a new kid on the epigenetic block?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

5-hydroxymethylcytosine and its potential roles in development and cancer.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905904

31 August 2018

Identifiers

DOI

10.1093/NAR/GKT1080

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

24214958

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24214958%20AND%20SRC:MED&resulttype=core&format=json