(Q54343517)

28 May 2018

title

Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. (English)

1 reference

28 May 2018

4

Arne Klungland

1 reference

28 May 2018

Adam B Robertson

1

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28 May 2018

John Arne Dahl

series ordinal

2

1 reference

28 May 2018

Rune Ougland

series ordinal

3

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28 May 2018

publication date

26 January 2012

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28 May 2018

published in

Nature Protocols

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28 May 2018

volume

7

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28 May 2018

issue

2

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28 May 2018

page(s)

340-350

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28 May 2018

https://scigraph.springernature.com/pub.10.1038/nprot.2011.443

exact match

0 references

cites work

Modification of brain deoxyribonucleic acid base content with maturation in normal and malnourished rats

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

The presence of 5-hydroxymethylcytosine at the gene promoter and not in the gene body negatively regulates gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

beta-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Base J: Discovery, Biosynthesis, and Possible Functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

beta-D-glucosyl-hydroxymethyluracil is a conserved DNA modification in kinetoplastid protozoans and is abundant in their telomeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Recognition of base J in duplex DNA by J-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

O-glycoside orientation is an essential aspect of base J recognition by the kinetoplastid DNA-binding protein JBP1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Direct detection of DNA methylation during single-molecule, real-time sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Detection of 5-hydroxymethylcytosine in a combined glycosylation restriction analysis (CGRA) using restriction enzyme Taq(α)I

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp. aureus USA300

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5-hydroxymethylcytosine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Protein production by auto-induction in high density shaking cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Studies with glucosyl transferase mutants of the T-even bacteriophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2011.443

Glucosylation of deoxyribonucleic acid by enzymes from bacteriophage-infected Escherichia coli

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22281869

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification and characterization of 5-hydroxymethyluracil-DNA glycosylase from calf thymus. Its possible role in the maintenance of methylated cytosine residues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22281869

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2011.443

1 reference

28 May 2018

1 reference

28 May 2018