(Q38318881)

2 September 2017

From atomic to mesoscopic descriptions of the internal dynamics of DNA. (English)

1 reference

2 September 2017

Bruant N

1

1 reference

2 September 2017

Flatters D

series ordinal

2

1 reference

2 September 2017

Lavery R

series ordinal

3

1 reference

2 September 2017

Genest D

series ordinal

4

1 reference

2 September 2017

language of work or name

English

0 references

publication date

1 November 1999

1 reference

2 September 2017

1 reference

2 September 2017

77

1 reference

2 September 2017

5

1 reference

2 September 2017

2366-2376

1 reference

Sequence-dependent dynamics of TATA-Box binding sites

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Structural equilibrium of DNA represented with different force fields

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Crystal structure of a yeast TBP/TATA-box complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Torison dynamics and depolarization of fluorescence of linear macromolecules. II. Fluorescence polarization anisotropy measurements on a clean viral phi 29 DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Decay of fluorescence emission anisotropy of the ethidium bromide-DNA complex. Evidence for an internal motion in DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Static and statistical bending of DNA evaluated by Monte Carlo simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Gene duplications in the structural evolution of chymotrypsin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Modeling superhelical DNA: recent analytical and dynamic approaches.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Simulating DNA at low resolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

How long does DNA keep the memory of its conformation? A time-dependent canonical correlation analysis of molecular dynamics simulation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Modification of DNA dynamics by platinum drug binding: a time-dependent fluorescence depolarization study of the interaction of cis- and trans-diamminedichloroplatinum(II) with DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Proton exchange and base-pair kinetics of poly(rA).poly(rU) and poly(rI).poly(rC).

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Molecular mechanics model of supercoiled DNA.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Supercoiled DNA energetics and dynamics by computer simulation

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Fluorescence anisotropy decay due to rotational brownian motion of ethidium intercalated in double strand DNA

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

X-ray diffuse scattering and rigid-body motion in crystalline lysozyme probed by molecular dynamics simulation.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

DNA: an extensible molecule.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300514

Multistep Brownian dynamics: application to short wormlike chains

31 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Theory of twisting and bending of chain macromolecules; analysis of the fluorescence depolarization of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Canonical analysis of correlated atomic motions in DNA from molecular dynamics simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Rigid-body motions of sub-units in DNA: a correlation analysis of a 200 ps molecular dynamics simulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Definitions and nomenclature of nucleic acid structure parameters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Conformational properties of the TATA-box binding sequence of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Search for rigid sub domains in DNA from molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

A single mode of DNA base-pair opening drives imino proton exchange

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Internal motions in deoxyribonucleic acid II

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Sequence-dependent DNA structure: the role of the sugar-phosphate backbone

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

On the Sampling Theory of Roots of Determinantal Equations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977074-8

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(99)77074-8

1 reference

2 September 2017

1 reference

2 September 2017

1 reference