(Q38330417)

2 September 2017

Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes (English)

1 reference

2 September 2017

Shallee T Page

26

0 references

Kirk R Anders

object named as

Kirk R Anders

2

0 references

Deborah Jacobs-Sera

39

object named as

Deborah Jacobs-Sera

1 reference

2 September 2017

41

Graham F Hatfull

1 reference

2 September 2017

Welkin H Pope

1

1 reference

2 September 2017

Madison Baird

3

1 reference

2 September 2017

Charles A Bowman

4

1 reference

2 September 2017

Michelle M Boyle

5

1 reference

2 September 2017

Gregory W Broussard

6

1 reference

2 September 2017

Tiffany Chow

7

1 reference

2 September 2017

Kari L Clase

8

1 reference

2 September 2017

Shannon Cooper

9

1 reference

2 September 2017

Kathleen A Cornely

10

1 reference

2 September 2017

Randall J DeJong

11

1 reference

2 September 2017

Veronique A Delesalle

12

1 reference

2 September 2017

Lisa Deng

13

1 reference

2 September 2017

David Dunbar

14

1 reference

2 September 2017

Nicholas P Edgington

15

1 reference

2 September 2017

Christina M Ferreira

16

1 reference

2 September 2017

Kathleen Weston Hafer

17

1 reference

2 September 2017

Grant A Hartzog

18

1 reference

2 September 2017

J Robert Hatherill

19

1 reference

2 September 2017

Lee E Hughes

20

1 reference

2 September 2017

Khristina Ipapo

21

1 reference

2 September 2017

Greg P Krukonis

22

1 reference

2 September 2017

Christopher G Meier

23

1 reference

2 September 2017

Denise L Monti

24

1 reference

2 September 2017

Matthew R Olm

25

1 reference

2 September 2017

Craig L Peebles

27

1 reference

2 September 2017

Claire A Rinehart

28

1 reference

2 September 2017

Michael R Rubin

29

1 reference

2 September 2017

Daniel A Russell

30

1 reference

2 September 2017

Erin R Sanders

31

1 reference

2 September 2017

Morgan Schoer

32

1 reference

2 September 2017

Christopher D Shaffer

33

1 reference

2 September 2017

James Wherley

34

1 reference

2 September 2017

Edwin Vazquez

35

1 reference

2 September 2017

Han Yuan

36

1 reference

2 September 2017

Daiyuan Zhang

37

1 reference

2 September 2017

Steven G Cresawn

38

1 reference

2 September 2017

Roger W Hendrix

40

1 reference

2 September 2017

language of work or name

English

0 references

publication date

11 December 2013

1 reference

2 September 2017

1 reference

2 September 2017

88

1 reference

2 September 2017

5

1 reference

2 September 2017

2461-2480

1 reference

Evolutionary relationships among actinophages and a putative adaptation for growth in Streptomyces spp

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Cluster J mycobacteriophages: intron splicing in capsid and tail genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Bacteriophage adhering to mucus provide a non-host-derived immunity.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Integration-dependent bacteriophage immunity provides insights into the evolution of genetic switches

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

On the nature of mycobacteriophage diversity and host preference

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Rewritable digital data storage in live cells via engineered control of recombination directionality

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Mycobacteriophage endolysins: diverse and modular enzymes with multiple catalytic activities

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The secret lives of mycobacteriophages

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The Bxb1 gp47 recombination directionality factor is required not only for prophage excision, but also for phage DNA replication.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Bacteriophages and their genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Phamerator: a bioinformatic tool for comparative bacteriophage genomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

A phage protein that binds φC31 integrase to switch its directionality

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

RtcB is the RNA ligase component of an Escherichia coli RNA repair operon

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The mycobacteriophage Ms6 encodes a chaperone-like protein involved in the endolysin delivery to the peptidoglycan.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Mycobacteriophages: genes and genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Synonymous codon usage analysis of thirty two mycobacteriophage genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

MEME SUITE: tools for motif discovery and searching

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

tRNA's wobble decoding of the genome: 40 years of modification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Efficient site-specific integration in Plasmodium falciparum chromosomes mediated by mycobacteriophage Bxb1 integrase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Control of phage Bxb1 excision by a novel recombination directionality factor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Application of phylogenetic networks in evolutionary studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The HHpred interactive server for protein homology detection and structure prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Integration and excision by the large serine recombinase phiRv1 integrase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Origins of highly mosaic mycobacteriophage genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Diversity in the serine recombinases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Luciferase reporter mycobacteriophages for detection, identification, and antibiotic susceptibility testing of Mycobacterium tuberculosis in Mexico

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Improved microbial gene identification with GLIMMER

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Consed: a graphical tool for sequence finishing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

The complete genome sequence of the Streptomyces temperate phage straight phiC31: evolutionary relationships to other viruses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Complete genome sequences of 138 mycobacteriophages

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Transcriptional silencing by the mycobacteriophage L5 repressor

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Transcriptional regulation of repressor synthesis in mycobacteriophage L5.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

A recombination function essential to the growth of bacteriophage P22

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Ig-like domains on bacteriophages: a tale of promiscuity and deceit

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Comparative analysis of the base composition and codon usages in fourteen mycobacteriophage genomes.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Superinfection immunity of mycobacteriophage L5: applications for genetic transformation of mycobacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3958112

Synonymous codon usage analysis of the mycobacteriophage Bxz1 and its plating bacteria M. smegmatis: identification of highly and lowly expressed genes of Bxz1 and the possible function of its tRNA species

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24335314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Functional role of mycobacteriophage transfer RNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24335314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome organization and characterization of mycobacteriophage Bxb1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24335314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.03363-13

1 reference

2 September 2017

1 reference

2 September 2017

PubMed publication ID

24335314

1 reference