(Q38347144)

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Tyrosine 105 and threonine 212 at outermost substrate binding subsites -6 and +4 control substrate specificity, oligosaccharide cleavage patterns, and multiple binding modes of barley alpha-amylase 1.

scientific article published on December 2003

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Europe PubMed Central

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21 December 2019

Tyrosine 105 and threonine 212 at outermost substrate binding subsites -6 and +4 control substrate specificity, oligosaccharide cleavage patterns, and multiple binding modes of barley alpha-amylase 1 (English)

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21 December 2019

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oligosaccharide

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based on heuristic

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4

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21 December 2019

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Kristian Sass Bak-Jensen

1

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21 December 2019

Gwenaëlle André

2

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21 December 2019

Tine E Gottschalk

3

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21 December 2019

Vinh Tran

5

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21 December 2019

Birte Svensson

6

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21 December 2019

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1 December 2003

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21 December 2019

Journal of Biological Chemistry

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21 December 2019

279

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21 December 2019

11

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21 December 2019

10093-10102

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21 December 2019

A Study of the Mechanism of Action of Taka-Amylase A1 on Linear Oligosaccharides by Product Analysis and Computer Simulation

1 reference

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21 January 2018

Subsite structure of Saccharomycopsis alpha-amylase secreted from Saccharomyces cerevisiae.

1 reference

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21 January 2018

Barley malt-alpha-amylase. Purification, action pattern, and subsite mapping of isozyme 1 and two members of the isozyme 2 subfamily using p-nitrophenylated maltooligosaccharide substrates

1 reference

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21 January 2018

Models for the action of barley alpha-amylase isozymes on linear substrates.

1 reference

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21 January 2018

Subsite mapping of the human pancreatic alpha-amylase active site through structural, kinetic, and mutagenesis techniques

1 reference

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21 January 2018

The active center of a mammalian alpha-amylase. Structure of the complex of a pancreatic alpha-amylase with a carbohydrate inhibitor refined to 2.2-A resolution

1 reference

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21 January 2018

Molecular structure of a barley alpha-amylase-inhibitor complex: implications for starch binding and catalysis

1 reference

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21 January 2018

Crystal structure of a catalytic-site mutant alpha-amylase from Bacillus subtilis complexed with maltopentaose

1 reference

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21 January 2018

X-ray structure of Novamyl, the five-domain "maltogenic" alpha-amylase from Bacillus stearothermophilus: maltose and acarbose complexes at 1.7A resolution

1 reference

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21 January 2018

Structural analysis of a chimeric bacterial alpha-amylase. High-resolution analysis of native and ligand complexes

1 reference

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21 January 2018

Relationship of sequence and structure to specificity in the alpha-amylase family of enzymes

1 reference

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21 January 2018

Enzymatic circularization of a malto-octaose linear chain studied by stochastic reaction path calculations on cyclodextrin glycosyltransferase

1 reference

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21 January 2018

Crystal and molecular structure of barley alpha-amylase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

A classification of glycosyl hydrolases based on amino acid sequence similarities

1 reference

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21 January 2018

Carbohydrate and protein-based inhibitors of porcine pancreatic alpha-amylase: structure analysis and comparison of their binding characteristics

1 reference

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21 January 2018

Structure of the Aspergillus oryzae alpha-amylase complexed with the inhibitor acarbose at 2.0 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

X-ray structures along the reaction pathway of cyclodextrin glycosyltransferase elucidate catalysis in the alpha-amylase family

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

The cyclization mechanism of cyclodextrin glycosyltransferase (CGTase) as revealed by a gamma-cyclodextrin-CGTase complex at 1.8-A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Structures of maltohexaose and maltoheptaose bound at the donor sites of cyclodextrin glycosyltransferase give insight into the mechanisms of transglycosylation activity and cyclodextrin size specificity

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Extensive features of tight oligosaccharide binding revealed in high-resolution structures of the maltodextrin transport/chemosensory receptor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Crystal structures of the psychrophilic alpha-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Specificity modulation of barley alpha-amylase through biased random mutagenesis involving a conserved tripeptide in beta --> alpha loop 7 of the catalytic (beta/alpha)(8)-barrel domain.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

The structure of barley alpha-amylase isozyme 1 reveals a novel role of domain C in substrate recognition and binding: a pair of sugar tongs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Relation between domain evolution, specificity, and taxonomy of the alpha-amylase family members containing a C-terminal starch-binding domain

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Domain B protruding at the third beta strand of the alpha/beta barrel in barley alpha-amylase confers distinct isozyme-specific properties.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Expression of cDNAs encoding barley alpha-amylase 1 and 2 in yeast and characterization of the secreted proteins

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Modulation of activity and substrate binding modes by mutation of single and double subsites +1/+2 and -5/-6 of barley alpha-amylase 1.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Improved activity and modulated action pattern obtained by random mutagenesis at the fourth beta-alpha loop involved in substrate binding to the catalytic (beta/alpha)8-barrel domain of barley alpha-amylase 1.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Barley alpha-amylase Met53 situated at the high-affinity subsite -2 belongs to a substrate binding motif in the beta-->alpha loop 2 of the catalytic (beta/alpha)8-barrel and is critical for activity and substrate specificity

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

The remote substrate binding subsite -6 in cyclodextrin-glycosyltransferase controls the transferase activity of the enzyme via an induced-fit mechanism

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Protein engineering of bacterial alpha-amylases.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Probing the atomic interactions between proteins and carbohydrates

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M312825200

21 January 2018

Calcium binding in alpha-amylases: an X-ray diffraction study at 2.1-A resolution of two enzymes from Aspergillus

1 reference

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21 January 2018

Activation of Bacillus licheniformis alpha-amylase through a disorder-->order transition of the substrate-binding site mediated by a calcium-sodium-calcium metal triad

1 reference

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21 January 2018

Substrate binding to a cyclodextrin glycosyltransferase and mutations increasing the gamma-cyclodextrin production

1 reference

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21 January 2018

Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution

1 reference

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21 January 2018

Overexpression, purification, and characterization of recombinant barley alpha-amylases 1 and 2 secreted by the methylotrophic yeast Pichia pastoris

1 reference

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21 January 2018

A general method for rapid site-directed mutagenesis using the polymerase chain reaction.

1 reference

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21 January 2018

DNA sequencing with chain-terminating inhibitors

1 reference

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21 January 2018

The Protein Data Bank

1 reference

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21 January 2018

Hydrophobic amino acid residues in the acceptor binding site are main determinants for reaction mechanism and specificity of cyclodextrin-glycosyltransferase.

1 reference

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21 January 2018

Protein engineering in the alpha-amylase family: catalytic mechanism, substrate specificity, and stability

1 reference

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21 January 2018

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1 reference

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Tryptophan 272: an essential determinant of crystalline cellulose degradation by Trichoderma reesei cellobiohydrolase Cel6A.

1 reference

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21 January 2018

Crystallographic evidence for substrate ring distortion and protein conformational changes during catalysis in cellobiohydrolase Ce16A from trichoderma reesei

1 reference

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21 January 2018

Structure and energetics of the glucoamylase-isomaltose transition-state complex probed by using modeling and deoxygenated substrates coupled with site-directed mutagenesis

1 reference

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21 January 2018

Energetic and mechanistic studies of glucoamylase using molecular recognition of maltose OH groups coupled with site-directed mutagenesis

1 reference

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21 January 2018

Influence of the aglycone region of the substrate binding cleft of Pseudomonas xylanase 10A on catalysis

1 reference

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21 January 2018

Specific inhibition of barley alpha-amylase 2 by barley alpha-amylase/subtilisin inhibitor depends on charge interactions and can be conferred to isozyme 1 by mutation

1 reference

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21 January 2018

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10.1074/JBC.M312825200

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14660599%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14660599%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

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