(Q38354690)

2 September 2017

title

Conformational characteristics and correlations in crystal structures of nucleic acid oligonucleotides: evidence for sub-states (English)

1 reference

2 September 2017

Conformational Characteristics and Correlations in Crystal Structures of Nucleic Acid Oligonucleotides: Evidence for Sub-states (English)

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

2 January 2024

1 reference

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

2 January 2024

author name string

Djuranovic D

1

1 reference

2 September 2017

Hartmann B

2

1 reference

2 September 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12744707

2 January 2024

publication date

1 June 2003

1 reference

full work available at URL

2 September 2017

http://www.tandfonline.com/doi/pdf/10.1080/10256018808623883

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Journal of Biomolecular Structure and Dynamics

2 January 2024

published in

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2 September 2017

volume

20

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2 September 2017

issue

6

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2 September 2017

page(s)

771-788

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Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex

2 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

NF-kappa B binding mechanism: a nuclear magnetic resonance and modeling study of a GGG --> CTC mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Sequence-dependent variations in the 31P NMR spectra and backbone torsional angles of wild-type and mutant Lac operator fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Polyamine-nucleic acid interactions and the effects on structure in oriented DNA fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Activation of nuclear factor kappaB by polyamines in breast cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Complex of B-DNA with polyamides freezes DNA backbone flexibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Indirect readout of the trp-repressor-operator complex by B-DNA's backbone conformation transitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Operator recognition by the phage 434 cI repressor: MD simulations of free and bound 50-bp DNA reveal important differences between the OR1 and OR2 sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

BI-BII transitions in B-DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Flexibility of the B-DNA backbone: effects of local and neighbouring sequences on pyrimidine-purine steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

BII nucleotides in the B and C forms of natural-sequence polymeric DNA: A new model for the C form of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Use of a 3D structure data base for understanding sequence-dependent conformational aspects of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

A-form conformational motifs in ligand-bound DNA structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Crystal studies of B-DNA: the answers and the questions

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Measuring the geometry of DNA grooves.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

NMR evidence for mechanical coupling of phosphate B(I)-B(II) transitions with deoxyribose conformational exchange in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Determination of the populations and structures of multiple conformers in an ensemble from NMR data: multiple-copy refinement of nucleic acid structures using floating weights

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Modeling furanose ring dynamics in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Solvent organization in an oligonucleotide crystal. The structure of d(GCGAATTCG)2 at atomic resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

31P NMR spectra of an oligodeoxyribonucleotide duplex lac operator-repressor headpiece complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Solution structure of the CpG containing d(CTTCGAAG)2 oligonucleotide: NMR data and energy calculations are compatible with a BI/BII equilibrium at CpG.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

A base-centred explanation of the B-to-A transition in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Relationship of DNA structure to internal dynamics: correlation of helical parameters from NOE-based NMR solution structures of d(GCGTACGC)(2) and d(CGCTAGCG)(2) with (13)C order parameters implies conformational coupling in dinucleotide units

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Influence of sequence on the conformation of the B-DNA helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Alpha/gamma transitions in the B-DNA backbone

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

How NF-κB can be attracted by its cognate DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Calibrating nucleic acids torsional energetics in force-field: insights from model compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

31P NMR analysis of the DNA conformation induced by protein binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Helical periodicity of DNA determined by enzyme digestion

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

Sequence dependence of the helical repeat of DNA in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2003.10506894

The dynamic impact of CpG methylation in DNA

21 January 2018

8

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

B-DNA twisting correlates with base-pair morphology.

2 January 2024

17

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

An in-the-groove view of DNA structures in complexes with proteins

2 January 2024

18

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

The mechanics of minor groove width variation in DNA, and its implications for the accommodation of ligands

2 January 2024

21

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Principles of Nucleic Acid Structure

2 January 2024

28

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

DNA bending and sequence-dependent backbone conformation NMR and computer experiments

2 January 2024

35

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Classical potential energy calculations for ApA, CpC, GpG, and UpU. The influence of the bases on RNA subunit conformations

2 January 2024

46

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Structural behavior of the CpG step in two related oligonucleotides reflects its malleability in solution

2 January 2024

47

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Helical periodicity of DNA, Poly(dA) . poly(dT) and poly(dA-dT). poly(dA-dT) in solution.

2 January 2024

51

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

Helix morphology changes in B-DNA induced by spontaneous B(I)<==>B(II) substrate interconversion

2 January 2024

55

1 reference

https://api.crossref.org/works/10.1080/07391102.2003.10506894

2 January 2024

Identifiers

1 reference

2 September 2017

1 reference