(Q38356330)

2 September 2017

title

Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis (English)

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2 September 2017

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3

Shinjiro Yamaguchi

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2 September 2017

7

Giltsu Choi

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2 September 2017

Eunkyoo Oh

1

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2 September 2017

Hyojin Kang

2

1 reference

2 September 2017

Jeongmoo Park

4

1 reference

2 September 2017

Doheon Lee

5

1 reference

2 September 2017

Yuji Kamiya

6

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2 September 2017

publication date

24 February 2009

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2 September 2017

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2 September 2017

volume

21

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2 September 2017

issue

2

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2 September 2017

page(s)

403-419

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Molecular biology of gibberellins signaling in higher plants

2 September 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5.

31 August 2018

1 reference

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Decoding of light signals by plant phytochromes and their interacting proteins

31 August 2018

1 reference

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Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis

31 August 2018

1 reference

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

31 August 2018

1 reference

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Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

31 August 2018

1 reference

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Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments

31 August 2018

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Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism.

31 August 2018

1 reference

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Seed dormancy and the control of germination

31 August 2018

1 reference

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A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway

31 August 2018

1 reference

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Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants

31 August 2018

1 reference

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Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis.

31 August 2018

1 reference

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Phytochrome structure and signaling mechanisms.

31 August 2018

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Lettuce seed germination: modulation of pregermination protein synthesis by gibberellic Acid, abscisic Acid, and cytokinin

31 August 2018

1 reference

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Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

31 August 2018

1 reference

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A Reversible Photoreaction Controlling Seed Germination

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs

31 August 2018

1 reference

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A global map of p53 transcription-factor binding sites in the human genome

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

The regulation of DWARF4 expression is likely a critical mechanism in maintaining the homeostasis of bioactive brassinosteroids in Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

The etr1-2 mutation in Arabidopsis thaliana affects the abscisic acid, auxin, cytokinin and gibberellin metabolic pathways during maintenance of seed dormancy, moist-chilling and germination

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

A role for brassinosteroids in germination in Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Nucleo-cytoplasmic partitioning of the plant photoreceptors phytochromes.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Phytochrome regulation and differential expression of gibberellin 3beta-hydroxylase genes in germinating Arabidopsis seeds

31 August 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

31 August 2018

12 December 2020

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660632

Phytochrome E Controls Light-Induced Germination of Arabidopsis

31 August 2018

1 reference

12 December 2020

Inhibition of Gibberellic Acid-induced Germination by Abscisic Acid and Reversal by Cytokinins

1 reference

12 December 2020

The Induction of Seed Germination in Arabidopsis thaliana Is Regulated Principally by Phytochrome B and Secondarily by Phytochrome A

1 reference

12 December 2020

Contribution of gibberellin deactivation by AtGA2ox2 to the suppression of germination of dark-imbibed Arabidopsis thaliana seeds

1 reference

12 December 2020

ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination

1 reference

12 December 2020

JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling

1 reference

12 December 2020

Identifiers

DOI

10.1105/TPC.108.064691

1 reference

2 September 2017

0 references

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