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Annotation of SBML models through rule-based semantic integration
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
title
Annotation of SBML models through rule-based semantic integration
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
author
Phillip Lord
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
Allyson L Lister
object named as
Allyson L Lister
series ordinal
1
0 references
Anil Wipat
object named as
Anil Wipat
series ordinal
4
0 references
author name string
Matthew Pocock
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
publication date
22 June 2010
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
published in
Journal of Biomedical Semantics
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
volume
1 Suppl 1
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
page(s)
S3
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
exact match
https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s3
0 references
cites work
Annotation and merging of SBML models with semanticSBML
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Saint: a lightweight integration environment for model annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
libAnnotationSBML: a library for exploiting SBML annotations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
A Semantic Web management model for integrative biomedical informatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Mapping the gene ontology into the unified medical language system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Automated manipulation of systems biology models using libSBML within Taverna workflows
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
The universal protein resource (UniProt)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Addressing the problems with life-science databases for traditional uses and systems biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
An agent- and ontology-based system for integrating public gene, protein, and disease databases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
BioGRID: a general repository for interaction datasets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Minimum information requested in the annotation of biochemical models (MIRIAM)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Heterogeneous database integration in biomedicine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
TAMBIS: transparent access to multiple bioinformatics information sources
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
6 September 2017
Modelling the checkpoint response to telomere uncapping in budding yeast.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
23 June 2018
Integrating BioPAX pathway knowledge with SBML models.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
31 August 2018
The CellML Model Repository
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722
retrieved
31 August 2018
Identifiers
DOI
10.1186/2041-1480-1-S1-S3
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
Dimensions Publication ID
1023001150
0 references
PMCID
2903722
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
PubMed ID
20626923
1 reference
stated in
Europe PubMed Central
PMCID
2903722
retrieved
2 September 2017
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