(Q38372101)

15 July 2018

title

Massively parallel single-nucleus RNA-seq with DroNc-seq (English)

1 reference

15 July 2018

single cell transcriptomics

main subject

RNA sequencing

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

14

Aviv Regev

0 references

Kristin Ardlie

10

Kristin Ardlie

0 references

Orit Rozenblatt-Rosen

12

Orit Rozenblatt-Rosen

1 reference

15 July 2018

3

Anindita Basu

1 reference

15 July 2018

Matan Hofree

6

Matan Hofree

1 reference

15 July 2018

Karthik Shekhar

5

Karthik Shekhar

1 reference

15 July 2018

author name string

Naomi Habib

1

1 reference

15 July 2018

Inbal Avraham-Davidi

2

1 reference

15 July 2018

Tyler Burks

4

1 reference

15 July 2018

Sourav R Choudhury

7

1 reference

15 July 2018

François Aguet

8

1 reference

15 July 2018

Ellen Gelfand

9

1 reference

15 July 2018

David A Weitz

11

1 reference

15 July 2018

Feng Zhang

13

1 reference

15 July 2018

language of work or name

English

0 references

publication date

28 August 2017

1 reference

15 July 2018

published in

Nature Methods

1 reference

15 July 2018

volume

14

1 reference

15 July 2018

issue

10

1 reference

15 July 2018

page(s)

955-958

1 reference

15 July 2018

describes a project that uses

brain

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

DroNc-seq

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

Comparative Analysis of Single-Cell RNA Sequencing Methods.

7 February 2021

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Scaling single-cell genomics from phenomenology to mechanism

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Revealing the vectors of cellular identity with single-cell genomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

STAR: ultrafast universal RNA-seq aligner

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Global quantification of mammalian gene expression control

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Control of gene expression during T cell activation: alternate regulation of mRNA transcription and mRNA stability

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Fabrication of microfluidic systems in poly(dimethylsiloxane).

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

RNA-sequencing from single nuclei

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Accounting for technical noise in single-cell RNA-seq experiments.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Maps of random walks on complex networks reveal community structure

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Genome-wide atlas of gene expression in the adult mouse brain

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5623139

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4407

Human genomics. The human transcriptome across tissues and individuals

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4407

inferred from DOI database lookup

7 January 2021

based on heuristic

Fabrication of microfluidic systems in poly(dimethylsiloxane)

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4407

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NMETH.4407

1 reference

15 July 2018

Dimensions Publication ID

0 references

1 reference

15 July 2018

PubMed publication ID

28846088

1 reference

15 July 2018