(Q38404894)

2 September 2017

A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics (English)

1 reference

2 September 2017

1 reference

1 reference

Hernán López-Fernández

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

author name string

Katriina L Ilves

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

publication date

5 February 2014

1 reference

Molecular Ecology Resources

2 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

page(s)

802-811

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

Basic local alignment search tool

31 May 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Mitogenomic evaluation of the historical biogeography of cichlids toward reliable dating of teleostean divergences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Manipulation of FASTQ data with Galaxy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Cone opsin genes of african cichlid fishes: tuning spectral sensitivity by differential gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Systematics and historical biogeography of Greater Antillean Cichlidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Choosing among partition models in Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Distinguishing Homologous from Analogous Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Age of cichlids: new dates for ancient lake fish radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Galaxy: a platform for interactive large-scale genome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Targeted enrichment: maximizing orthologous gene comparisons across deep evolutionary time

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Age and spread of the haplochromine cichlid fishes in Africa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Adaptive evolution and explosive speciation: the cichlid fish model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Multilocus phylogeny and rapid radiations in Neotropical cichlid fishes (Perciformes: Cichlidae: Cichlinae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Applications of next-generation sequencing to phylogeography and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A novel primer set for multilocus phylogenetic inference in East African cichlid fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Phylogenomics: gene duplication, unrecognized paralogy and outgroup choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Quality control and preprocessing of metagenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

African cichlid fish: a model system in adaptive radiation research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

STRAW: Species TRee Analysis Web server

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Phylogeny and biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Natural selection of the rhodopsin gene during the adaptive radiation of East African Great Lakes cichlid fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Visual pigment molecular evolution in the Trinidadian pike cichlid (Crenicichla frenata): a less colorful world for neotropical cichlids?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12222

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12222

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24410873%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

1 reference