(Q38416233)

English

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens

scientific article published on 04 June 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens (English)

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

Rebecca Chalkley

object named as

Rebecca Chalkley

5

0 references

object named as

Henry M Wood

1

0 references

author name string

Ornella Belvedere

2

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

Caroline Conway

3

1 reference

Europe PubMed Central

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2 September 2017

Catherine Daly

4

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Europe PubMed Central

PMC publication ID

2 September 2017

Melissa Bickerdike

6

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Europe PubMed Central

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2 September 2017

Claire McKinley

7

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Europe PubMed Central

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2 September 2017

Phil Egan

8

1 reference

Europe PubMed Central

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2 September 2017

Lisa Ross

9

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

Bruce Hayward

10

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Europe PubMed Central

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2 September 2017

Joanne Morgan

11

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Europe PubMed Central

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2 September 2017

Leslie Davidson

12

1 reference

Europe PubMed Central

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2 September 2017

Ken MacLennan

13

1 reference

Europe PubMed Central

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2 September 2017

Thian K Ong

14

1 reference

Europe PubMed Central

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2 September 2017

Kostas Papagiannopoulos

15

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Europe PubMed Central

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2 September 2017

Ian Cook

16

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Europe PubMed Central

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2 September 2017

David J Adams

17

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Europe PubMed Central

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2 September 2017

Graham R Taylor

18

1 reference

Europe PubMed Central

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2 September 2017

Pamela Rabbitts

19

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Europe PubMed Central

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2 September 2017

language of work or name

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publication date

4 June 2010

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Europe PubMed Central

PMC publication ID

2 September 2017

full work available at URL

http://eprints.whiterose.ac.uk/81490

content deliverer

White Rose Research Online

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published version

1 reference

White Rose Research Online

http://eprints.whiterose.ac.uk/81490

15 December 2018

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

38

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Europe PubMed Central

PMC publication ID

2 September 2017

14

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

e151

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

copyright license

Creative Commons Attribution-NonCommercial 2.5 Generic

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

massive parallel sequencing

1 reference

based on heuristic

inferred from title

Progressive 3q amplification consistently targets SOX2 in preinvasive squamous lung cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Molecular predictors of outcome with gefitinib and docetaxel in previously treated non-small-cell lung cancer: data from the randomized phase III INTEREST trial

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

The UCSC Genome Browser database: update 2010

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Random DNA fragmentation allows detection of single-copy, single-exon alterations of copy number by oligonucleotide array CGH in clinical FFPE samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

High-throughput multiplex sequencing to discover copy number variants in Drosophila

1 reference

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6 September 2017

DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Systems medicine: the future of medical genomics and healthcare

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

High-resolution mapping of copy-number alterations with massively parallel sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Accurate whole human genome sequencing using reversible terminator chemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Identification of genetic variants using bar-coded multiplexed sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Microdissection molecular copy-number counting (microMCC)--unlocking cancer archives with digital PCR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Chromosomal imbalances in oral squamous cell carcinoma: examination of 31 cell lines and review of the literature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Construction and use of spotted large-insert clone DNA microarrays for the detection of genomic copy number changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

A faster circular binary segmentation algorithm for the analysis of array CGH data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Interrogation of genomes by molecular copy-number counting (MCC).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

The human genome browser at UCSC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Two epithelial tumor cell lines (HNE-1 and HONE-1) latently infected with Epstein-Barr virus that were derived from nasopharyngeal carcinomas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

6 September 2017

Sensitive and accurate detection of copy number variants using read depth of coverage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

23 June 2018

Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

23 June 2018

Frequency and extent of allelic loss in the short arm of chromosome 3 in nonsmall-cell lung cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

23 June 2018

FHIT and FRA3B 3p14.2 allele loss are common in lung cancer and preneoplastic bronchial lesions and are associated with cancer-related FHIT cDNA splicing aberrations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919738

31 August 2018

Comparative genomic hybridization analysis detects frequent, often high-level, overrepresentation of DNA sequences at 3q, 5p, 7p, and 8q in human non-small cell lung carcinomas

1 reference

https://pubmed.ncbi.nlm.nih.gov/20525786

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Somatic genetic changes accompanying lung tumor development

1 reference

https://pubmed.ncbi.nlm.nih.gov/20525786

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

3p14 and 9p21 loss is a simple tool for predicting second oral malignancy at previously treated oral cancer sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/20525786

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clonal divergence in lung cancer development is associated with allelic loss on chromosome 4

1 reference

https://pubmed.ncbi.nlm.nih.gov/20525786

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA gains in 3q occur frequently in squamous cell carcinoma of the lung, but not in adenocarcinoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/20525786

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ510

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

10.1093/NAR/GKQ510

0 references

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

2 September 2017

ResearchGate publication ID

0 references

2-s2.0-77955778246

0 references

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