(Q38417783)

2 September 2017

qcML: an exchange format for quality control metrics from mass spectrometry experiments (English)

1 reference

2 September 2017

0 references

15

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2 September 2017

21

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2 September 2017

Juan Antonio Vizcaíno

26

1 reference

2 September 2017

27

1 reference

2 September 2017

23

Karl Mechtler

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Stephan Aiche

Stephan Aiche

17

0 references

Wout Bittremieux

Wout Bittremieux

4

0 references

Christian D. Kelstrup

Christian D Kelstrup

14

0 references

An Staes

An Staes

9

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Kris Laukens

Kris Laukens

19

0 references

Ruedi Aebersold

24

Ruedi Aebersold

1 reference

2 September 2017

29

Lennart Martens

1 reference

2 September 2017

28

Oliver Kohlbacher

1 reference

2 September 2017

22

Albert J R Heck

1 reference

2 September 2017

1

Mathias Walzer

1 reference

2 September 2017

2

Lucia Espona Pernas

1 reference

2 September 2017

3

Sara Nasso

1 reference

2 September 2017

5

Sven Nahnsen

1 reference

2 September 2017

6

Pieter Kelchtermans

1 reference

2 September 2017

8

Henk W P van den Toorn

1 reference

2 September 2017

Jonathan Vandenbussche

10

Jonathan Vandenbussche

1 reference

2 September 2017

11

Michael Mazanek

1 reference

2 September 2017

13

Richard A Scheltema

1 reference

2 September 2017

16

Bas van Breukelen

1 reference

2 September 2017

20

Kathryn S Lilley

1 reference

2 September 2017

25

Kris Gevaert

1 reference

2 September 2017

Dirk Valkenborg

18

0 references

author name string

Peter Pichler

7

1 reference

2 September 2017

Thomas Taus

12

1 reference

2 September 2017

23 April 2014

1 reference

Molecular & Cellular Proteomics

2 September 2017

1 reference

2 September 2017

13

1 reference

2 September 2017

8

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2 September 2017

1905-1913

1 reference

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics

2 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Automated quality control system for LC-SRM setups

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Data processing methods and quality control strategies for label-free LC-MS protein quantification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Controlled vocabularies and ontologies in proteomics: overview, principles and practice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Interlaboratory studies and initiatives developing standards for proteomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Quality assessment for clinical proteomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The Units Ontology: a tool for integrating units of measurement in science

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The mzIdentML data standard for mass spectrometry-based proteomics results

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

TraML--a standard format for exchange of selected reaction monitoring transition lists

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

A posteriori quality control for the curation and reuse of public proteomics data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

mzML--a community standard for mass spectrometry data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The Ontology Lookup Service: bigger and better

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Using Laboratory Information Management Systems as central part of a proteomics data workflow

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The PSI semantic validator: a framework to check MIAPE compliance of proteomics data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

OpenMS - an open-source software framework for mass spectrometry

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

TOPP--the OpenMS proteomics pipeline

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

TANDEM: matching proteins with tandem mass spectra

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Bringing proteomics into the clinic: the need for the field to finally take itself seriously

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Quality Control in Proteomics

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125725

Metriculator: quality assessment for mass spectrometry-based proteomics

1 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24760958

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M113.035907

1 reference

2 September 2017

1 reference

2 September 2017

PubMed publication ID

24760958

1 reference