(Q38436885)

3 September 2017

miRNAs target databases: developmental methods and target identification techniques with functional annotations (English)

1 reference

3 September 2017

Nagendra Kumar Singh

1

1 reference

PubMed ID

28204845

3 September 2017

language of work or name

1 reference

15 February 2017

1 reference

Cellular and Molecular Life Sciences

3 September 2017

1 reference

3 September 2017

74

1 reference

3 September 2017

12

1 reference

3 September 2017

2239-2261

1 reference

https://scigraph.springernature.com/pub.10.1007/s00018-017-2469-1

3 September 2017

0 references

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MicroRNAs in autoimmune diseases

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21 January 2018

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MicroRNA regulation and its effects on cellular transcriptome in human immunodeficiency virus-1 (HIV-1) infected individuals with distinct viral load and CD4 cell counts

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Target discovery from data mining approaches

21 January 2018

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Plasma miR-208 as a biomarker of myocardial injury

21 January 2018

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Plasma miRNAs as potential biomarkers of chronic degenerative valvular disease in Dachshunds

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Emerging role of non-coding RNA in neural plasticity, cognitive function, and neuropsychiatric disorders

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21 January 2018

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Origin, biogenesis, and activity of plant microRNAs

21 January 2018

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MicroRNA Target Identification-Experimental Approaches.

21 January 2018

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Experimental strategies for microRNA target identification

21 January 2018

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HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens.

21 January 2018

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One decade of development and evolution of microRNA target prediction algorithms

21 January 2018

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A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction

21 January 2018

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Common features of microRNA target prediction tools

21 January 2018

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psRNATarget: a plant small RNA target analysis server

21 January 2018

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PsRobot: a web-based plant small RNA meta-analysis toolbox

21 January 2018

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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

21 January 2018

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Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

21 January 2018

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miRU: an automated plant miRNA target prediction server

21 January 2018

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

21 January 2018

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Target-align: a tool for plant microRNA target identification

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Computational prediction of plant miRNA targets.

21 January 2018

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Employing machine learning for reliable miRNA target identification in plants

21 January 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

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Most mammalian mRNAs are conserved targets of microRNAs

21 January 2018

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

21 January 2018

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Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

21 January 2018

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RNAhybrid: microRNA target prediction easy, fast and flexible

21 January 2018

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MicroRNA targets in Drosophila

21 January 2018

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

21 January 2018

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Computational prediction of miRNAs in Arabidopsis thaliana

21 January 2018

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microRNA target predictions across seven Drosophila species and comparison to mammalian targets

21 January 2018

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doRiNA: a database of RNA interactions in post-transcriptional regulation

21 January 2018

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Combinatorial microRNA target predictions

21 January 2018

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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

21 January 2018

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The role of site accessibility in microRNA target recognition

21 January 2018

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Inference of miRNA targets using evolutionary conservation and pathway analysis

21 January 2018

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DIANA-microT web server: elucidating microRNA functions through target prediction

21 January 2018

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MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence

21 January 2018

1 reference

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRTar: an integrated system for identifying miRNA-target interactions in human

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Using expression profiling data to identify human microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miTarget: microRNA target gene prediction using a support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

TargetSpy: a supervised machine learning approach for microRNA target prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MiRTif: a support vector machine-based microRNA target interaction filter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Improving the prediction of human microRNA target genes by using ensemble algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Prediction of both conserved and nonconserved microRNA targets in animals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MTar: a computational microRNA target prediction architecture for human transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRror-Suite: decoding coordinated regulation by microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miREE: miRNA recognition elements ensemble

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

The database of experimentally supported targets: a functional update of TarBase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

TarBase: A comprehensive database of experimentally supported animal microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Validated MicroRNA Target Databases: An Evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRecords: an integrated resource for microRNA-target interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRGator: an integrated system for functional annotation of microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRGator v2.0: an integrated system for functional investigation of microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRTarBase: a database curates experimentally validated microRNA-target interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

A novel biclustering algorithm for the discovery of meaningful biological correlations between microRNAs and their target genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRDB: a microRNA target prediction and functional annotation database with a wiki interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

The microRNA.org resource: targets and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

HOCTAR database: a unique resource for microRNA target prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MicroRNA target prediction by expression analysis of host genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

RepTar: a database of predicted cellular targets of host and viral miRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

microPIR: an integrated database of microRNA target sites within human promoter sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Pharmaco-miR: linking microRNAs and drug effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

TransmiR: a transcription factor-microRNA regulation database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

PuTmiR: a database for extracting neighboring transcription factors of human microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

miR-EdiTar: a database of predicted A-to-I edited miRNA target sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

ViTa: prediction of host microRNAs targets on viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Vir-Mir db: prediction of viral microRNA candidate hairpins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Bioinformatic discovery of microRNA precursors from human ESTs and introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

MicroRNA Cancer Regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

Network Reconstruction for the Identification of miRNA:mRNA Interaction Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-017-2469-1

PMTED: a plant microRNA target expression database

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28204845

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

MicroRNAs in human cancer

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28204845

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A microRNA cascade in plant defense

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28204845

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00018-017-2469-1

1 reference

3 September 2017

1 reference

PubMed ID

28204845