(Q38468114)

3 September 2017

Pantograph: A template-based method for genome-scale metabolic model reconstruction (English)

1 reference

3 September 2017

David James Sherman

3

0 references

author name string

Nicolas Loira

series ordinal

1

1 reference

PubMed ID

25572717

3 September 2017

Anna Zhukova

series ordinal

2

1 reference

3 September 2017

8 January 2015

1 reference

Journal of Bioinformatics and Computational Biology

3 September 2017

1 reference

3 September 2017

13

1 reference

3 September 2017

2

1 reference

3 September 2017

1550006

1 reference

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

3 September 2017

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

The ENZYME data bank in 1995

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Yarrowia lipolytica as a model for bio-oil production

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

LibSBML: an API library for SBML.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Controlled vocabularies and semantics in systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Chemical Entities of Biological Interest: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Toward the automated generation of genome-scale metabolic networks in the SEED.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Reconstruction of biochemical networks in microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

The biomass objective function

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Yarrowia lipolytica mutants devoid of pyruvate carboxylase activity show an unusual growth phenotype.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Reconstructing the metabolic network of a bacterium from its genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

The Pathway Tools software

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Identifying metabolic enzymes with multiple types of association evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Recent advances in reconstruction and applications of genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Annotation and merging of SBML models with semanticSBML

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

GrowMatch: an automated method for reconciling in silico/in vivo growth predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Payao: a community platform for SBML pathway model curation

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Family relationships: should consensus reign?--consensus clustering for protein families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Accelerating the reconstruction of genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Missing genes in metabolic pathways: a comparative genomics approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Computational methods for metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Optimization based automated curation of metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Comparative genomics of protoploid Saccharomycetaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Characterization of Yarrowia lipolytica mutants affected in hydrophobic substrate utilization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

A protocol for generating a high-quality genome-scale metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

Isolation and characterization of acetoacetyl-CoA thiolase gene essential for n-decane assimilation in yeast Yarrowia lipolytica

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720015500067

10.1142/S0219720015500067

21 January 2018

Identifiers

DOI

1 reference

3 September 2017

journals/jbcb/LoiraZS15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

25572717