(Q38498600)

3 September 2017

Implications of functional similarity for gene regulatory interactions (English)

1 reference

3 September 2017

2

Edward Ott

1 reference

3 September 2017

4

Michelle Girvan

1 reference

3 September 2017

1

Kimberly Glass

1 reference

3 September 2017

3

Wolfgang Losert

1 reference

3 September 2017

1 February 2012

1 reference

3 September 2017

12

1 reference

Journal of the Royal Society Interface

inferred from page(s)

published in

1 reference

3 September 2017

9

1 reference

3 September 2017

72

1 reference

3 September 2017

1625-1636

1 reference

Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model

3 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Fast integration of heterogeneous data sources for predicting gene function with limited annotation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

The Gene Ontology in 2010: extensions and refinements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Fast gene ontology based clustering for microarray experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Metrics for GO based protein semantic similarity: a systematic evaluation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

A transversal approach to predict gene product networks from ontology-based similarity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Correlation between gene expression and GO semantic similarity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

A new measure for functional similarity of gene products based on Gene Ontology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Assessing semantic similarity measures for the characterization of human regulatory pathways

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Functional cartography of complex metabolic networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

GOToolBox: functional analysis of gene datasets based on Gene Ontology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Predicting gene function from patterns of annotation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Network motifs: simple building blocks of complex networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Creating the gene ontology resource: design and implementation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Lethality and centrality in protein networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

Gene ontology: tool for the unification of biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

An integrative genomics approach to the reconstruction of gene networks in segregating populations.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3367803

The Structure and Function of Complex Networks

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2011.0585

Power-Law Distributions in Empirical Data

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2011.0585

A probabilistic functional network of yeast genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22298814

12 December 2020

inferred from PubMed ID database lookup

Gene Expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationships

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22298814

12 December 2020

inferred from PubMed ID database lookup

The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22298814

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1098/RSIF.2011.0585

1 reference

3 September 2017

1 reference

3 September 2017

1 reference

PMCID

3367803