(Q38510491)

3 September 2017

title

Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks (English)

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3 September 2017

main subject

cis-regulatory element

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1

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3 September 2017

5

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3 September 2017

4

Lieven De Veylder

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author name string

Mauricio Quimbaya

series ordinal

2

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3 September 2017

Tine Casneuf

series ordinal

3

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3 September 2017

language of work or name

English

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publication date

8 April 2009

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3 September 2017

number of pages

12

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based on heuristic

inferred from page(s)

published in

Plant Physiology

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3 September 2017

volume

150

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3 September 2017

issue

2

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3 September 2017

page(s)

535-546

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The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana

3 September 2017

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Annotating genes of known and unknown function by large-scale coexpression analysis

31 August 2018

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Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules

31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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An Arabidopsis gene network based on the graphical Gaussian model.

31 August 2018

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31 August 2018

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The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

31 August 2018

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31 August 2018

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31 August 2018

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Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns.

31 August 2018

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Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics

31 August 2018

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Large-scale cis-element detection by analysis of correlated expression and sequence conservation between Arabidopsis and Brassica oleracea

31 August 2018

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Transcriptional coordination of the metabolic network in Arabidopsis.

31 August 2018

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31 August 2018

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Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine

31 August 2018

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A universal algorithm for genome-wide in silicio identification of biologically significant gene promoter putative cis-regulatory-elements; identification of new elements for reactive oxygen species and sucrose signaling in Arabidopsis

31 August 2018

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Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana

31 August 2018

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A gene expression map of Arabidopsis thaliana development

31 August 2018

1 reference

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

31 August 2018

1 reference

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Genome wide analysis of Arabidopsis core promoters

31 August 2018

1 reference

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Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach

31 August 2018

1 reference

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From co-expression to co-regulation: how many microarray experiments do we need?

31 August 2018

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Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes

31 August 2018

1 reference

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Genome-wide gene expression in an Arabidopsis cell suspension.

31 August 2018

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A gene expression map of the Arabidopsis root

31 August 2018

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31 August 2018

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A gene-coexpression network for global discovery of conserved genetic modules

31 August 2018

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31 August 2018

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Identifying regulatory networks by combinatorial analysis of promoter elements

31 August 2018

1 reference

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The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors

31 August 2018

1 reference

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Clustering gene expression patterns

31 August 2018

1 reference

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Plant cis-acting regulatory DNA elements (PLACE) database: 1999

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689962

Fluorescent imaging of GUS activity and RT-PCR analysis of gene expression in the shoot apical meristem

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2689962

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19357200

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A web site for the computational analysis of yeast regulatory sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19357200

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1104/PP.109.136028

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3 September 2017

0 references

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