(Q38520877)

3 September 2017

title

Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis (English)

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3 September 2017

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6

John Quackenbush

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author name string

Fenglong Liu

1

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3 September 2017

Tara Vantoai

2

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3 September 2017

Linda P Moy

3

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3 September 2017

Geoffrey Bock

4

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3 September 2017

Lara D Linford

5

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3 September 2017

language of work or name

English

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publication date

25 February 2005

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3 September 2017

number of pages

15

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inferred from page(s)

published in

Plant Physiology

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3 September 2017

volume

137

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3 September 2017

issue

3

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3 September 2017

page(s)

1115-1129

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DNA sequences required for anaerobic expression of the maize alcohol dehydrogenase 1 gene.

3 September 2017

cites work

1 reference

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Submission of microarray data to public repositories

16 September 2018

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Microarray analyses of gene expression during adventitious root development in Pinus contorta

16 September 2018

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Reactive oxygen signalling: the latest news

16 September 2018

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Cardiac transcriptional response to acute and chronic angiotensin II treatments

16 September 2018

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OXYGEN DEFICIENCY AND ROOT METABOLISM: Injury and Acclimation Under Hypoxia and Anoxia

16 September 2018

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Class-1 hemoglobins, nitrate and NO levels in anoxic maize cell-suspension cultures.

16 September 2018

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An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein

16 September 2018

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Hypobaric biology: Arabidopsis gene expression at low atmospheric pressure

16 September 2018

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LRR-containing receptors regulating plant development and defense.

16 September 2018

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Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data

16 September 2018

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Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants ofArabidopsis thaliana

16 September 2018

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Identifying biological themes within lists of genes with EASE

16 September 2018

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Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins

16 September 2018

1 reference

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The Arabidopsis LATERAL ORGAN BOUNDARIES-Domain Gene ASYMMETRIC LEAVES2 Functions in the Repression of KNOX Gene Expression and in Adaxial-Abaxial Patterning

16 September 2018

1 reference

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Expression of a stress-induced hemoglobin affects NO levels produced by alfalfa root cultures under hypoxic stress.

16 September 2018

1 reference

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A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Enhanced low oxygen survival in Arabidopsis through increased metabolic flux in the fermentative pathway.

16 September 2018

1 reference

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Response of plant metabolism to too little oxygen

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Trehalose metabolism: a regulatory role for trehalose-6-phosphate?

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray

16 September 2018

1 reference

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TM4: a free, open-source system for microarray data management and analysis

16 September 2018

1 reference

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Contrasting effects of submergence in light and dark on pyruvate decarboxylase activity in roots of rice lines differing in submergence tolerance

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Molecular and cellular adaptations of maize to flooding stress

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Enhancing the anaerobic response

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Molecular characterization and expression analysis of 1-aminocyclopropane-1-carboxylate oxidase homologs from potato under abiotic and biotic stresses.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Standards for microarray data

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

The lateral organ boundaries gene defines a novel, plant-specific gene family

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Calcium at the crossroads of signaling.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

From genome to function: the Arabidopsis aquaporins

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Plant bZIP G-box binding factors. Modular structure and activation mechanisms

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Signaling events in the hypoxic induction of alcohol dehydrogenase gene in Arabidopsis

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Significance analysis of microarrays applied to the ionizing radiation response

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Ectopic expression of ABI3 gene enhances freezing tolerance in response to abscisic acid and low temperature in Arabidopsis thaliana.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Programmed cell death and aerenchyma formation in roots

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

1-aminocyclopropane-1-carboxylate oxidase activity limits ethylene biosynthesis in Rumex palustris during submergence

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Adventitious root growth and cell-cycle induction in deepwater rice

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

A flooding-induced xyloglucan endo-transglycosylase homolog in maize is responsive to ethylene and associated with aerenchyma

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Separate cis sequences and trans factors direct metabolic and developmental regulation of a potato tuber storage protein gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Differential interactions of promoter elements in stress responses of the Arabidopsis Adh gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Trehalose synthase: guard to the gate of glycolysis in yeast?

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Analysis of LE-ACS3, a 1-aminocyclopropane-1-carboxylic acid synthase gene expressed during flooding in the roots of tomato plants

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Characterization of a maize G-box binding factor that is induced by hypoxia

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Involvement of intracellular calcium in anaerobic gene expression and survival of maize seedlings.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

A plant leucine zipper protein that recognizes an abscisic acid response element

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

The anaerobic responsive element contains two GC-rich sequences essential for binding a nuclear protien and hypoxic activation of the maizeAdh1promoter

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Molecular strategies for improving waterlogging tolerance in plants

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Expression profile analysis of the low-oxygen response in Arabidopsis root cultures

16 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065411

Functional properties of the anaerobic responsive element of the maize Adh1 gene

3 December 2018

1 reference

12 December 2020

Transgenic AEQUORIN reveals organ-specific cytosolic Ca2+ responses to anoxia and Arabidopsis thaliana seedlings

1 reference

12 December 2020

Ethylene Biosynthesis during Aerenchyma Formation in Roots of Maize Subjected to Mechanical Impedance and Hypoxia

1 reference

12 December 2020

Plant aquaporins: multifunctional water and solute channels with expanding roles

1 reference

12 December 2020

Rapid repression of maize invertases by low oxygen. Invertase/sucrose synthase balance, sugar signaling potential, and seedling survival

1 reference

12 December 2020

Ethylene induces epidermal cell death at the site of adventitious root emergence in rice

1 reference

12 December 2020

The anaerobic proteins of maize

1 reference

12 December 2020

Arabidopsis roots and shoots have different mechanisms for hypoxic stress tolerance

1 reference

12 December 2020

Expression of the Enzymes of Nitrate Reduction during the Anaerobic Germination of Rice

1 reference

12 December 2020

Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.104.055475

1 reference

3 September 2017

0 references

1 reference