(Q38600104)

4 September 2017

Using cascading Bloom filters to improve the memory usage for de Brujin graphs (English)

1 reference

4 September 2017

Gregory Kucherov

3

0 references

author name string

Kamil Salikhov

series ordinal

1

1 reference

4 September 2017

Gustavo Sacomoto

series ordinal

2

1 reference

4 September 2017

language of work or name

1 reference

24 February 2014

1 reference

Algorithms for Molecular Biology

4 September 2017

1 reference

4 September 2017

9

1 reference

4 September 2017

1

1 reference

4 September 2017

2

1 reference

DSK: k-mer counting with very low memory usage

4 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Exploiting sparseness in de novo genome assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Meta-IDBA: a de Novo assembler for metagenomic data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Full-length transcriptome assembly from RNA-Seq data without a reference genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Succinct data structures for assembling large genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Assembly algorithms for next-generation sequencing data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

An Eulerian path approach to DNA fragment assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

The complete genome sequence of Escherichia coli K-12

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

De novo assembly and genotyping of variants using colored de Bruijn graphs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

Space-efficient and exact de Bruijn graph representation based on a Bloom filter

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3974045

31 August 2018

Identifiers

DOI

10.1186/1748-7188-9-2

1 reference

journals/almob/SalikhovSK14

4 September 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 September 2017

PubMed publication ID

24565280

1 reference