(Q38668207)

5 September 2017

title

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom (English)

1 reference

5 September 2017

1 reference

Mary Ann Moran

4

0 references

author name string

Marine Landa

series ordinal

1

1 reference

5 September 2017

Andrew S Burns

series ordinal

2

1 reference

5 September 2017

Selena J Roth

series ordinal

3

1 reference

5 September 2017

publication date

21 July 2017

1 reference

5 September 2017

1 reference

Dynamic metabolic exchange governs a marine algal-bacterial interaction.

5 September 2017

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1 reference

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Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom.

31 August 2018

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Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR.

31 August 2018

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Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus

31 August 2018

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Deciphering ocean carbon in a changing world

31 August 2018

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Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP

31 August 2018

1 reference

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A Bacterial Quorum-Sensing Precursor Induces Mortality in the Marine Coccolithophore, Emiliania huxleyi

31 August 2018

1 reference

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Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria.

31 August 2018

1 reference

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Purine catabolic pathway revealed by transcriptomics in the model marine bacterium Ruegeria pomeroyi DSS-3.

31 August 2018

1 reference

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Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

31 August 2018

1 reference

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An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

31 August 2018

1 reference

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Single-taxon field measurements of bacterial gene regulation controlling DMSP fate.

31 August 2018

1 reference

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Cryptic carbon and sulfur cycling between surface ocean plankton

31 August 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

31 August 2018

1 reference

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Evolutionary ecology of the marine Roseobacter clade

31 August 2018

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31 August 2018

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Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling.

31 August 2018

1 reference

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Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The CckA-ChpT-CtrA phosphorelay system is regulated by quorum sensing and controls flagellar motility in the marine sponge symbiont Ruegeria sp. KLH11.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Interactions between diatoms and bacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Recalcitrant dissolved organic carbon fractions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Fast gapped-read alignment with Bowtie 2

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The GtaR protein negatively regulates transcription of the gtaRI operon and modulates gene transfer agent (RcGTA) expression in Rhodobacter capsulatus

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Genome characteristics of a generalist marine bacterial lineage

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Bifurcated degradative pathway of 3-sulfolactate in Roseovarius nubinhibens ISM via sulfoacetaldehyde acetyltransferase and (S)-cysteate sulfolyase

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Occurrence and expression of gene transfer agent genes in marine bacterioplankton

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Quorum sensing, communication and cross-kingdom signalling in the bacterial world.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Ecological genomics of marine Roseobacters

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Bacterial taxa that limit sulfur flux from the ocean.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Inducible transcription of genes involved in taurine uptake and dissimilation by Silicibacter pomeroyi DSS-3T.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

L-cysteate sulpho-lyase, a widespread pyridoxal 5'-phosphate-coupled desulphonative enzyme purified from Silicibacter pomeroyi DSS-3(T)

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Algae acquire vitamin B12 through a symbiotic relationship with bacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

A bacterial signal transduction system controls genetic exchange and motility

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Quorum Sensing in Bacteria

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5702724

The Ecological Role of Water-Column Microbes in the Sea

31 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

Dinoflagellate diversity and distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

SYNERGISTIC EFFECTS OF LIGHT, TEMPERATURE, AND NITROGEN SOURCE ON TRANSCRIPTION OF GENES FOR CARBON AND NITROGEN METABOLISM IN THE CENTRIC DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE)1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

Regulatory systems controlling motility and gene transfer agent production and release in Rhodobacter capsulatus

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

Spring development of phytoplankton biomass and composition in major water masses of the Atlantic sector of the Southern Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

7 January 2021

inferred from DOI database lookup

Motility is involved in Silicibacter sp. TM1040 interaction with dinoflagellates

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

7 January 2021

inferred from DOI database lookup

Effects of micro-algae commonly used in aquaculture on acyl-homoserine lactone quorum sensing

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2017.117

7 January 2021

inferred from DOI database lookup

Genetic diversity of ?satellite? bacteria present in cultures of marine diatoms

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28731474

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/ISMEJ.2017.117

1 reference

Dimensions Publication ID

5 September 2017

1090851376

0 references

PMC publication ID

5702724

0 references

1 reference