(Q38668893)

PubMed publication ID

28633401

5 September 2017

title

Biomedical text mining for research rigor and integrity: tasks, challenges, directions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

main subject

biomedical text mining

1 reference

1 reference

1

Halil Kilicoglu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

publication date

13 June 2017

1 reference

PubMed publication ID

28633401

Briefings in Bioinformatics

5 September 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

volume

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

page(s)

1400-1414

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

1,500 scientists lift the lid on reproducibility

13 May 2020

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The extent and consequences of p-hacking in science

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On the reproducibility of science: unique identification of research resources in the biomedical literature

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Increasing disparities between resource inputs and outcomes, as measured by certain health deliverables, in biomedical research

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Why most published research findings are false

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Almost all articles on cancer prognostic markers report statistically significant results

21 January 2018

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Believe it or not: how much can we rely on published data on potential drug targets?

21 January 2018

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Estimating the reproducibility of psychological science

21 January 2018

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Misconduct accounts for the majority of retracted scientific publications

21 January 2018

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Ranking major and minor research misbehaviors: results from a survey among participants of four World Conferences on Research Integrity.

21 January 2018

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Clinical Trial Registration: A Statement from the International Committee of Medical Journal Editors

21 January 2018

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CONSORT 2010 statement: updated guidelines for reporting parallel group randomised trials

21 January 2018

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SCIENTIFIC STANDARDS. Promoting an open research culture

21 January 2018

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The FAIR Guiding Principles for scientific data management and stewardship

21 January 2018

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Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery

21 January 2018

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Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

21 January 2018

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A systematic examination of the citation of prior research in reports of randomized, controlled trials

21 January 2018

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How citation distortions create unfounded authority: analysis of a citation network

21 January 2018

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Methods for identifying versioned and plagiarized documents

21 January 2018

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Transparent and accurate reporting increases reliability, utility, and impact of your research: reporting guidelines and the EQUATOR Network

21 January 2018

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Improving bioscience research reporting: the ARRIVE guidelines for reporting animal research

21 January 2018

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Does use of the CONSORT Statement impact the completeness of reporting of randomised controlled trials published in medical journals? A Cochrane review

21 January 2018

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Making research articles fit for purpose: structured reporting of key methods and findings

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Systematic review automation technologies

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Using text mining for study identification in systematic reviews: a systematic review of current approaches

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Evolution of Reporting P Values in the Biomedical Literature, 1990-2015.

21 January 2018

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Database citation in full text biomedical articles.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

ExaCT: automatic extraction of clinical trial characteristics from journal publications

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Evidence based medicine: what it is and what it isn't

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Identifying scientific artefacts in biomedical literature: the Evidence Based Medicine use case.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Comparability and reproducibility of biomedical data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Extraction of data deposition statements from the literature: a method for automatically tracking research results

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Towards automatic recognition of scientifically rigorous clinical research evidence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

An overview of the design and methods for retrieving high-quality studies for clinical care.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

SemMedDB: a PubMed-scale repository of biomedical semantic predications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Using semantic predications to uncover drug-drug interactions in clinical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Biomedical question answering using semantic relations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Large-scale event extraction from literature with multi-level gene normalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

PharmGKB: the Pharmacogenetics Knowledge Base

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

All that glitters isn't gold: a survey on acknowledgment of limitations in biomedical studies

21 January 2018

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Corpus annotation for mining biomedical events from literature

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

New directions in biomedical text annotation: definitions, guidelines and corpus construction

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Enriching a biomedical event corpus with meta-knowledge annotation

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Extracting semantically enriched events from biomedical literature

21 January 2018

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Zone analysis in biology articles as a basis for information extraction

21 January 2018

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Weakly supervised learning of information structure of scientific abstracts--is it accurate enough to benefit real-world tasks in biomedicine?

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Automatic recognition of conceptualization zones in scientific articles and two life science applications

21 January 2018

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Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion

21 January 2018

1 reference

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The biomedical discourse relation bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Automatic discourse connective detection in biomedical text

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

An index to quantify an individual's scientific research output

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Measuring academic influence: Not all citations are equal

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

The structural and content aspects of abstracts versus bodies of full text journal articles are different

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Literature mining of genetic variants for curation: quantifying the importance of supplementary material

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Setting our bibliographic references free: towards open citation data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

The SWAN biomedical discourse ontology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Crowdsourcing in biomedicine: challenges and opportunities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

The Resource Identification Initiative: A Cultural Shift in Publishing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Exploring subdomain variation in biomedical language

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

BioText Search Engine: beyond abstract search

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Figure mining for biomedical research.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

QTLMiner: QTL database curation by mining tables in literature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Ability of a meta-analysis to prevent redundant research: systematic review of studies on pain from propofol injection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBX057

Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations

21 January 2018

1 reference

12 December 2020

Automatically classifying the role of citations in biomedical articles.

1 reference

12 December 2020

Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles

1 reference

12 December 2020

A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men.

1 reference

12 December 2020

Biological event composition

1 reference

12 December 2020

Drug development: Raise standards for preclinical cancer research

1 reference

12 December 2020

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis

1 reference

12 December 2020

Plagiarism in scientific writing: words or ideas?

1 reference

12 December 2020

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective

1 reference

12 December 2020

1 reference

12 December 2020

Concept annotation in the CRAFT corpus

1 reference

12 December 2020

Automatically extracting sentences from Medline citations to support clinicians' information needs

1 reference

12 December 2020

Assisted curation: does text mining really help?

1 reference

12 December 2020

Relative Citation Ratio (RCR): A New Metric That Uses Citation Rates to Measure Influence at the Article Level

1 reference

12 December 2020

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes

1 reference

12 December 2020

RobotReviewer: evaluation of a system for automatically assessing bias in clinical trials

1 reference

12 December 2020

The Unified Medical Language System

1 reference

12 December 2020

Fish oil, Raynaud's syndrome, and undiscovered public knowledge

1 reference

12 December 2020

Towards evidence based research

1 reference

12 December 2020

Automatic classification of sentences to support Evidence Based Medicine

1 reference

12 December 2020

Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox

1 reference

12 December 2020

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

1 reference

12 December 2020

'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text

1 reference

12 December 2020

An overview of MetaMap: historical perspective and recent advances

1 reference

12 December 2020

Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE

1 reference

12 December 2020

Author Name Disambiguation in MEDLINE

1 reference

12 December 2020

Lessons for research ethics committees

1 reference

12 December 2020

Citation Sentiment Analysis in Clinical Trial Papers

1 reference

12 December 2020

GENIA corpus--semantically annotated corpus for bio-textmining.

1 reference

12 December 2020

Extracting PICO Sentences from Clinical Trial Reports using Supervised Distant Supervision

1 reference

12 December 2020

An IR-Based Approach Utilizing Query Expansion for Plagiarism Detection in MEDLINE.

1 reference

12 December 2020

Technical editing of research reports in biomedical journals

1 reference

12 December 2020

How many scientists fabricate and falsify research? A systematic review and meta-analysis of survey data

1 reference

12 December 2020

Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference

1 reference

12 December 2020

Identifiers

DOI

10.1093/BIB/BBX057

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

DBLP publication ID

journals/bib/Kilicoglu18

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6291799&resulttype=core&format=json

13 May 2020

PubMed publication ID

28633401

1 reference