(Q38671177)

5 September 2017

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity (English)

1 reference

single cell transcriptomics

5 September 2017

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

Tim Xiaoming Hu

6

0 references

Stephen J. Clark

Stephen J Clark

2

0 references

Heather J Lee

Heather J Lee

3

0 references

Iain C Macaulay

Iain C Macaulay

4

0 references

Felix Krueger

Felix Krueger

7

0 references

Gavin Kelsey

Gavin Kelsey

11

0 references

Wolf Reik

13

Wolf Reik

1 reference

5 September 2017

10

Thierry Voet

1 reference

5 September 2017

12

Oliver Stegle

1 reference

5 September 2017

Christof Angermueller

1

1 reference

5 September 2017

Mabel J Teng

5

1 reference

5 September 2017

Sebastien Smallwood

8

1 reference

5 September 2017

Chris P Ponting

9

1 reference

5 September 2017

11 January 2016

1 reference

external data available at URL

5 September 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74534

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

5 September 2017

13

1 reference

5 September 2017

3

1 reference

5 September 2017

229-232

1 reference

https://scigraph.springernature.com/pub.10.1038/nmeth.3728

5 September 2017

0 references

cites work

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Integrated genome and transcriptome sequencing of the same cell

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Function and information content of DNA methylation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Dynamic heterogeneity and DNA methylation in embryonic stem cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Reprogramming the methylome: erasing memory and creating diversity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell sequencing-based technologies will revolutionize whole-organism science

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Master transcription factors and mediator establish super-enhancers at key cell identity genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Functions of DNA methylation: islands, start sites, gene bodies and beyond

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Independent filtering increases detection power for high-throughput experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Fast and SNP-tolerant detection of complex variants and splicing in short reads

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Nanog safeguards pluripotency and mediates germline development

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

A heterogeneous expression pattern for Nanog in embryonic stem cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Pluripotency re-centered around Esrrb

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

DNA-binding factors shape the mouse methylome at distal regulatory regions

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770512

Single-cell gene expression profiling

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26752769

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.3728

1 reference

Dimensions Publication ID

5 September 2017

0 references

1 reference

5 September 2017

1 reference