(Q38671556)

28 October 2017

m6aViewer: software for the detection, analysis and visualization of N6-methyl-adenosine peaks from m6A-seq/ME-RIP sequencing data (English)

1 reference

28 October 2017

1 reference

8

David T Bonthron

0 references

Ian M. Carr

10

object named as

Ian M Carr

0 references

Alexander Markham

7

object named as

Alexander F Markham

0 references

Adrian Whitehouse

object named as

Adrian Whitehouse

9

0 references

author name string

Agne Antanaviciute

1

1 reference

28 October 2017

Belinda Baquero-Perez

2

1 reference

28 October 2017

Christopher M Watson

3

1 reference

28 October 2017

Sally M Harrison

4

1 reference

28 October 2017

Carolina Lascelles

5

1 reference

28 October 2017

Laura Crinnion

6

1 reference

28 October 2017

language of work or name

English

0 references

publication date

19 July 2017

1 reference

full work available at URL

28 October 2017

http://eprints.whiterose.ac.uk/119866/

content deliverer

White Rose Research Online

0 references

published in

RNA

1 reference

28 October 2017

23

1 reference

28 October 2017

10

1 reference

28 October 2017

1493-1501

1 reference

A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

28 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Identification and analysis of the N(6)-methyladenosine in the Saccharomyces cerevisiae transcriptome

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

An association study of the m6A genes with major depressive disorder in Chinese Han population

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

N6-methyladenosine marks primary microRNAs for processing

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

ArrayExpress update--simplifying data submissions

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

The dynamic epitranscriptome: N6-methyladenosine and gene expression control

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

miRBase: annotating high confidence microRNAs using deep sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Exome-based analysis for RNA epigenome sequencing data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

MeRIP-PF: an easy-to-use pipeline for high-resolution peak-finding in MeRIP-Seq data

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

One size does not fit all: on how Markov model order dictates performance of genomic sequence analyses

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

STAR: ultrafast universal RNA-seq aligner

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

23 June 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

The Sequence Alignment/Map format and SAMtools

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Model-based analysis of ChIP-Seq (MACS)

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

What is a hidden Markov model?

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

The UCSC Table Browser data retrieval tool

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

The human genome browser at UCSC

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Interpolated Markov models for eukaryotic gene finding.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Microbial gene identification using interpolated Markov models

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Initializing partition-optimization algorithms.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

What is the expectation maximization algorithm?

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5602108

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1261%2FRNA.058206.116

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1261%2FRNA.058206.116

Estimating the Dimension of a Model

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1261%2FRNA.058206.116

21 January 2018

Identifiers

DOI

10.1261/RNA.058206.116

1 reference

Dimensions Publication ID

28 October 2017

10.1261/RNA.058206.116

0 references

CORE ID

151184634

0 references

1090822947

0 references

Microsoft Academic ID

0 references

1 reference

28 October 2017

PubMed publication ID

28724534

1 reference