Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q38763560)
Watch
English
Pseudotime estimation: deconfounding single cell time series
scientific article published on 17 June 2016
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
5039927
retrieved
6 September 2017
title
Pseudotime estimation: deconfounding single cell time series
(English)
1 reference
stated in
Europe PubMed Central
PMCID
5039927
retrieved
6 September 2017
main subject
RNA sequencing
0 references
author
John Reid
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
author name string
Lorenz Wernisch
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
language of work or name
English
0 references
publication date
17 June 2016
1 reference
stated in
Europe PubMed Central
PMCID
5039927
retrieved
6 September 2017
published in
Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
volume
32
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
issue
19
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
page(s)
2973-2980
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
copyright license
Creative Commons Attribution 4.0 International
start time
26 October 2016
1 reference
stated in
April 2023 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Modeling bi-modality improves characterization of cell cycle on gene expression in single cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single cell analysis reveals the stochastic phase of reprogramming to pluripotency is an ordered probabilistic process
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Temporal dynamics and transcriptional control using single-cell gene expression analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Dynamic regulatory network controlling TH17 cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Model-based method for transcription factor target identification with limited data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Direct multiplexed measurement of gene expression with color-coded probe pairs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
6 September 2017
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
14 September 2017
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
23 June 2018
Accounting for technical noise in single-cell RNA-seq experiments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
23 June 2018
Bayesian correlated clustering to integrate multiple datasets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
23 June 2018
A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
23 June 2018
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
31 August 2018
Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5039927
retrieved
31 August 2018
Probabilistic Principal Component Analysis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW372
retrieved
21 January 2018
Identifiers
DOI
10.1093/BIOINFORMATICS/BTW372
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
DBLP publication ID
journals/bioinformatics/ReidW16
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
5039927
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
PubMed ID
27318198
1 reference
stated in
Europe PubMed Central
PMCID
5039927
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27318198%20AND%20SRC:MED&resulttype=core&format=json
retrieved
9 June 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit