(Q41861103)

13 October 2017

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells (English)

1 reference

single cell transcriptomics

13 October 2017

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

John L Rinn

10

0 references

Cole Trapnell

1

object named as

Cole Trapnell

1 reference

13 October 2017

9

Tarjei S Mikkelsen

1 reference

13 October 2017

8

Kenneth J Livak

1 reference

13 October 2017

Davide Cacchiarelli

2

1 reference

13 October 2017

Jonna Grimsby

3

1 reference

13 October 2017

Prapti Pokharel

4

1 reference

13 October 2017

Shuqiang Li

5

1 reference

13 October 2017

Michael Morse

6

1 reference

13 October 2017

Niall J Lennon

7

1 reference

13 October 2017

23 March 2014

1 reference

external data available at URL

13 October 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52529

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

13 October 2017

32

1 reference

13 October 2017

381-386

1 reference

13 October 2017

4

1 reference

describes a project that uses

13 October 2017

muscle

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

exact match

https://scigraph.springernature.com/pub.10.1038/nbt.2859

0 references

cites work

Single-cell sequencing-based technologies will revolutionize whole-organism science

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

An expansive human regulatory lexicon encoded in transcription factor footprints

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

ChromHMM: automating chromatin-state discovery and characterization

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Myoblast fusion: lessons from flies and mice

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Discovering biological progression underlying microarray samples

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Extracting dynamics from static cancer expression data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

The multiple roles of CUX1: insights from mouse models and cell-based assays

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

XBP1 controls diverse cell type- and condition-specific transcriptional regulatory networks

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

An initial blueprint for myogenic differentiation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Expression profiling and identification of novel genes involved in myogenic differentiation.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Reconstructing the temporal ordering of biological samples using microarray data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Independent component analysis: algorithms and applications

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Autoactivation of Xenopus MyoD transcription and its inhibition by USF.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

Muscle injury activates resident fibro/adipogenic progenitors that facilitate myogenesis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4122333

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

18 August 2018

1 reference

Testing for the consecutive ones property, interval graphs, and graph planarity using PQ-tree algorithms

21 January 2018

1 reference

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

GENCODE: producing a reference annotation for ENCODE

21 January 2018

1 reference

Differential analysis of gene regulation at transcript resolution with RNA-seq

21 January 2018

1 reference

Estimation of Relationships for Limited Dependent Variables

21 January 2018

1 reference

A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen

21 January 2018

1 reference

miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy

21 January 2018

1 reference

Comprehensive algorithm for quantitative real-time polymerase chain reaction

21 January 2018

1 reference

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

Camera: a competitive gene set test accounting for inter-gene correlation

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1038/NBT.2859

1 reference

13 October 2017

1 reference

13 October 2017

1 reference