(Q38910227)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27464266%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

title

Stochastic Proximity Embedding: Methods and Applications (English)

1 reference

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19 March 2020

2

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19 March 2020

4

Deepak Bandyopadhyay

1 reference

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19 March 2020

author name string

Dimitris K Agrafiotis

series ordinal

1

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19 March 2020

Fangqiang Zhu

series ordinal

3

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19 March 2020

Pu Liu

series ordinal

5

1 reference

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19 March 2020

publication date

17 November 2010

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19 March 2020

published in

Molecular Informatics

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19 March 2020

volume

29

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19 March 2020

issue

11

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19 March 2020

page(s)

758-770

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Nonlinear mapping networks.

19 March 2020

cites work

1 reference

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A geodesic framework for analyzing molecular similarities.

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Conformational sampling by self-organization.

21 January 2018

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On the effects of permuted input on conformational sampling of drug-like molecules: an evaluation of stochastic proximity embedding.

21 January 2018

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Comparison of knowledge-based and distance geometry approaches for generation of molecular conformations

21 January 2018

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A modified update rule for stochastic proximity embedding

21 January 2018

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A self-organizing algorithm for molecular alignment and pharmacophore development.

8 April 2023

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Automated assignment of simulated and experimental NOESY spectra of proteins by feedback filtering and self-correcting distance geometry

8 April 2023

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Visualization and interpretation of high content screening data

8 April 2023

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Combinatorial informatics in the post-genomics ERA.

8 April 2023

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Conformational analysis using distance geometry methods.

8 April 2023

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Automated Docking of Flexible Molecules Into Receptor Binding Sites by Ligand Self-Organization In Situ

8 April 2023

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A method for quantifying and visualizing the diversity of QSAR models

8 April 2023

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Conformational analysis of macrocycles: finding what common search methods miss.

8 April 2023

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Conformational sampling of bioactive molecules: a comparative study

8 April 2023

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Stochastic proximity embedding.

8 April 2023

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Distance geometry generates native-like folds for small helical proteins using the consensus distances of predicted protein structures

8 April 2023

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A self-organizing algorithm for modeling protein loops.

8 April 2023

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Nonmetric multidimensional scaling: A numerical method

8 April 2023

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https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

A global geometric framework for nonlinear dimensionality reduction

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Self-organizing superimposition algorithm for conformational sampling.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

A distance geometry heuristic for expanding the range of geometries sampled during conformational search.

8 April 2023

1 reference

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A self-organizing principle for learning nonlinear manifolds

8 April 2023

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A Nonlinear Mapping for Data Structure Analysis

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Fast determination of the optimal rotational matrix for macromolecular superpositions

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Advanced biological and chemical discovery (ABCD): centralizing discovery knowledge in an inherently decentralized world

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

An evaluation of the combined use of nuclear magnetic resonance and distance geometry for the determination of protein conformations in solution

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Exploring the nonlinear geometry of protein homology.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Conformational sampling with stochastic proximity embedding and self-organizing superimposition: establishing reasonable parameters for their practical use.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Nonlinear dimensionality reduction by locally linear embedding

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Orientational sampling and rigid-body minimization in molecular docking

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Broadening access to electronic healthcare databases.

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

Oriented substituent pharmacophore PRopErtY space (OSPPREYS): a substituent-based calculation that describes combinatorial library products better than the corresponding product-based calculation

8 April 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1002/MINF.201000134

8 April 2023

Identifiers

DOI

10.1002/MINF.201000134

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27464266%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

1 reference