(Q39005162)

8 September 2017

title

Comparison of experimental fine-mapping to in silico prediction results of HIV-1 epitopes reveals ongoing need for mapping experiments (English)

1 reference

8 September 2017

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Julia Roider

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Tim Meissner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Franziska Kraut

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Renate Stirner

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Johannes R Bogner

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Rika Draenert

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

publication date

1 October 2014

1 reference

8 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

143

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

193-201

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24724694%20AND%20SRC:MED&resulttype=core&format=json

Adaptation of CD8 T cell responses to changing HIV-1 sequences in a cohort of HIV-1 infected individuals not selected for a certain HLA allele

13 June 2020

cites work

1 reference

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30 August 2018

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Peptide-based vaccinology: experimental and computational approaches to target hypervariable viruses through the fine characterization of protective epitopes recognized by monoclonal antibodies and the identification of T-cell-activating peptides

30 August 2018

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HIV escape mutations occur preferentially at HLA-binding sites of CD8 T-cell epitopes.

30 August 2018

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Characterization of HIV-specific CD4+ T cell responses against peptides selected with broad population and pathogen coverage

30 August 2018

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30 August 2018

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Uncommon pathways of immune escape attenuate HIV-1 integrase replication capacity

30 August 2018

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Control of M184V HIV-1 mutants by CD8 T-cell responses.

30 August 2018

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30 August 2018

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30 August 2018

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Identification of potential human respiratory syncytial virus and metapneumovirus T cell epitopes using computational prediction and MHC binding assays

30 August 2018

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Translation of HLA-HIV associations to the cellular level: HIV adapts to inflate CD8 T cell responses against Nef and HLA-adapted variant epitopes

30 August 2018

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MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles

30 August 2018

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Prediction of epitopes using neural network based methods

30 August 2018

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MHC-I prediction using a combination of T cell epitopes and MHC-I binding peptides

30 August 2018

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Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity.

30 August 2018

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Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

30 August 2018

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An introduction to epitope prediction methods and software

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Transmission and long-term stability of compensated CD8 escape mutations

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

NetMHCpan, a method for MHC class I binding prediction beyond humans

30 August 2018

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

30 August 2018

1 reference

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Broadly immunogenic HLA class I supertype-restricted elite CTL epitopes recognized in a diverse population infected with different HIV-1 subtypes.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Leveraging information across HLA alleles/supertypes improves epitope prediction

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

The validity of predicted T-cell epitopes.

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Immunoinformatics comes of age

30 August 2018

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A community resource benchmarking predictions of peptide binding to MHC-I molecules

30 August 2018

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A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

30 August 2018

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How TCRs bind MHCs, peptides, and coreceptors

30 August 2018

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Constraints on HIV-1 evolution and immunodominance revealed in monozygotic adult twins infected with the same virus

30 August 2018

1 reference

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The design and implementation of the immune epitope database and analysis resource

30 August 2018

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Prediction of CTL epitopes using QM, SVM and ANN techniques.

30 August 2018

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Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities

30 August 2018

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Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

30 August 2018

1 reference

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Simian-human immunodeficiency virus escape from cytotoxic T-lymphocyte recognition at a structurally constrained epitope.

30 August 2018

1 reference

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Bioinformatics tools for identifying class I-restricted epitopes

30 August 2018

1 reference

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Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

30 August 2018

1 reference

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Comparison of overlapping peptide sets for detection of antiviral CD8 and CD4 T cell responses

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection

30 August 2018

1 reference

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Support vector machine classification and validation of cancer tissue samples using microarray expression data

30 August 2018

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The HLA system. Second of two parts

30 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172136

The HLA system. First of two parts

30 August 2018

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Identification of dominant optimal HLA-B60- and HLA-B61-restricted cytotoxic T-lymphocyte (CTL) epitopes: rapid characterization of CTL responses by enzyme-linked immunospot assay

30 August 2018

1 reference

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SYFPEITHI: database for MHC ligands and peptide motifs

30 August 2018

1 reference

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Long-term culture and fine specificity of human cytotoxic T-lymphocyte clones reactive with human immunodeficiency virus type 1.

30 August 2018

1 reference

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Quantifying the uncertainty in forecasts of anthropogenic climate change

30 August 2018

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Reversion of CTL escape–variant immunodeficiency viruses in vivo

21 January 2018

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HIV-specific cytotoxic T lymphocytes in seropositive individuals

21 January 2018

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Tat-specific cytotoxic T lymphocytes select for SIV escape variants during resolution of primary viraemia

21 January 2018

1 reference

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Identification of a novel HLA-A24-restricted cytotoxic T-lymphocyte epitope derived from HIV-1 Gag protein

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24724694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Impact of intrapeptide epitope location on CD8 T cell recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24724694

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of a novel HLA-A24-restricted cytotoxic T-lymphocyte epitope within HIV-1 Nef

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24724694