(Q33247448)

24 July 2017

A community resource benchmarking predictions of peptide binding to MHC-I molecules (English)

1 reference

24 July 2017

computational benchmark

1 reference

Ward Fleri

10

0 references

Soren Buus

Soren Buus

14

0 references

Alessandro Sette

15

Alessandro Sette

1 reference

24 July 2017

1

Bjoern Peters

1 reference

24 July 2017

Ole Lund

13

0 references

Huynh-Hoa Bui

2

Huynh-Hoa Bui

1 reference

24 July 2017

12

John Sidney

1 reference

24 July 2017

5

Claus Lundegaard

1 reference

ORCID Public Data File 2021

24 July 2017

1 reference

Kasper Lamberth

8

Kasper Lamberth

1 reference

24 July 2017

Sune Frankild

3

1 reference

24 July 2017

Morten Nielson

4

1 reference

24 July 2017

Emrah Kostem

6

1 reference

24 July 2017

Derek Basch

7

1 reference

24 July 2017

Mikkel Harndahl

9

1 reference

24 July 2017

Stephen S Wilson

11

1 reference

24 July 2017

9 June 2006

1 reference

PLOS Computational Biology

24 July 2017

1 reference

24 July 2017

2

1 reference

24 July 2017

6

1 reference

24 July 2017

e65

1 reference

Creative Commons Attribution 4.0 International

24 July 2017

start time

9 June 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Classification of A1- and A24-supertype molecules by analysis of their MHC-peptide binding repertoires

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

The design and implementation of the immune epitope database and analysis resource

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

The immune epitope database and analysis resource: from vision to blueprint

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Important role of cathepsin S in generating peptides for TAP-independent MHC class I crosspresentation in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Proteasomes get by with lots of help from their friends

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Remnant epitopes generate autoimmunity: from rheumatoid arthritis and multiple sclerosis to diabetes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Simultaneous prediction of binding capacity for multiple molecules of the HLA B44 supertype

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Tumors as elusive targets of T-cell-based active immunotherapy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

TAP-independent antigen presentation on MHC class I molecules: lessons from Epstein–Barr virus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

MHCBN: a comprehensive database of MHC binding and non-binding peptides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Population of the HLA ligand database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Prediction of MHC class I binding peptides, using SVMHC

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Methods for prediction of peptide binding to MHC molecules: a comparative study.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Producing nature's gene-chips: the generation of peptides for display by MHC class I molecules

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

A neural network model approach to the study of human TAP transporter

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

SYFPEITHI: database for MHC ligands and peptide motifs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Ligand dissociation constants from competition binding assays: errors associated with ligand depletion.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Measuring the accuracy of diagnostic systems

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

A computational resource for the prediction of peptide binding to Indian rhesus macaque MHC class I molecules.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

MHCPred: bringing a quantitative dimension to the online prediction of MHC binding.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

MAPPP: MHC class I antigenic peptide processing prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

ProPred1: prediction of promiscuous MHC Class-I binding sites.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

An essential role for tripeptidyl peptidase in the generation of an MHC class I epitope.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Prediction of proteasome cleavage motifs by neural networks

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475712

Establishment of a quantitative ELISA capable of determining peptide - MHC class I interaction

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16789818

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

In silico prediction of peptide binding affinity to class I mouse major histocompatibility complexes: a comparative molecular similarity index analysis (CoMSIA) study

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16789818

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The many faces of binding artefacts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16789818

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0020065

1 reference

journals/ploscb/PetersBFNLKBLHFWSLBS06

24 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

24 July 2017

1 reference