(Q43976304)

28 November 2017

title

Prediction of proteasome cleavage motifs by neural networks (English)

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28 November 2017

5

Søren Brunak

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author name string

Can Keşmir

1

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28 November 2017

Alexander K Nussbaum

2

1 reference

28 November 2017

Hansjörg Schild

3

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28 November 2017

Vincent Detours

4

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28 November 2017

publication date

1 April 2002

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Protein Engineering Design and Selection

28 November 2017

published in

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28 November 2017

volume

15

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28 November 2017

issue

4

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28 November 2017

page(s)

287-296

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describes a project that uses

28 November 2017

artificial neural network

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based on heuristic

inferred from title

cites work

Sequence signals for generation of antigenic peptides by the proteasome: implications for proteasomal cleavage mechanism

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Naturally occurring nucleosome positioning signals in human exons and introns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Mapping the active site of papain with the aid of peptide substrates and inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Prediction of human mRNA donor and acceptor sites from the DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

MHCPEP, a database of MHC-binding peptides: update 1997.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Altered properties of the branched chain amino acid-preferring activity contribute to increased cleavages after branched chain residues by the "immunoproteasome."

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Evidence that the nature of amino acid residues in the P3 position directs substrates to distinct catalytic sites of the pituitary multicatalytic proteinase complex (proteasome).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Immunoproteasomes shape immunodominance hierarchies of antiviral CD8(+) T cells at the levels of T cell repertoire and presentation of viral antigens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Efficient processing of an antigenic sequence for presentation by MHC class I molecules depends on its neighboring residues in the protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The human 26 S and 20 S proteasomes generate overlapping but different sets of peptide fragments from a model protein substrate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Gamma-interferon and expression of MHC genes regulate peptide hydrolysis by proteasomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Synpolydactyly phenotypes correlate with size of expansions in HOXD13 polyalanine tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Structure of 20S proteasome from yeast at 2.4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The CAG/polyglutamine tract diseases: gene products and molecular pathogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Molecular pathogenesis of prion diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

An algorithm for the prediction of proteasomal cleavages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Cytotoxic T lymphocyte epitopes of HIV-1 Nef: Generation of multiple definitive major histocompatibility complex class I ligands by proteasomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Processing of some antigens by the standard proteasome but not by the immunoproteasome results in poor presentation by dendritic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Mutations involving the transcription factor CBFA1 cause cleidocranial dysplasia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Cluster analysis of amino acid indices for prediction of protein structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The proteolytic fragments generated by vertebrate proteasomes: structural relationships to major histocompatibility complex class I binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Potential immunocompetence of proteolytic fragments produced by proteasomes before evolution of the vertebrate immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Cleavage motifs of the yeast 20S proteasome beta subunits deduced from digests of enolase 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Discrete proteolytic intermediates in the MHC class I antigen processing pathway and MHC I-dependent peptide trimming in the ER.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Predicting the secondary structure of globular proteins using neural network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

SYFPEITHI: database for MHC ligands and peptide motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Degradation of cell proteins and the generation of MHC class I-presented peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Sequence logos: a new way to display consensus sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Generation of the vesicular stomatitis virus nucleoprotein cytotoxic T lymphocyte epitope requires proteasome-dependent and -independent proteolytic activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Two new proteases in the MHC class I processing pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

The sequence alteration associated with a mutational hotspot in p53 protects cells from lysis by cytotoxic T lymphocytes specific for a flanking peptide epitope

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Discrete cleavage motifs of constitutive and immunoproteasomes revealed by quantitative analysis of cleavage products

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Differential processing of class-I-restricted epitopes by the standard proteasome and the immunoproteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Identification of Db- and Kb-restricted subdominant cytotoxic T-cell responses in lymphocytic choriomeningitis virus-infected mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Differential influence on cytotoxic T lymphocyte epitope presentation by controlled expression of either proteasome immunosubunits or PA28

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Generating MHC class I ligands from viral gene products

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

Proteolytic processing in the secretory pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

MHC-linked LMP gene products specifically alter peptidase activities of the proteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2F15.4.287

21 January 2018

Identifiers

DOI

10.1093/PROTEIN/15.4.287

1 reference

28 November 2017

1 reference