(Q39023626)

8 September 2017

H3K4me2 reliably defines transcription factor binding regions in different cells (English)

1 reference

8 September 2017

Ying Wang

1

1 reference

PubMed ID

24530516

8 September 2017

Xiaoman Li

series ordinal

2

1 reference

PubMed ID

24530516

8 September 2017

Haiyan Hu

series ordinal

3

1 reference

8 September 2017

12 February 2014

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8 September 2017

1 reference

8 September 2017

103

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8 September 2017

2-3

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8 September 2017

222-228

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Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4.

8 September 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

DNA binding sites: representation and discovery

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Genome-wide mapping of in vivo protein-DNA interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

DREME: motif discovery in transcription factor ChIP-seq data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

On the detection and refinement of transcription factor binding sites using ChIP-Seq data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Systematic identification of conserved motif modules in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Deep and wide digging for binding motifs in ChIP-Seq data.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

An integrated encyclopedia of DNA elements in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

What does our genome encode?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

High-resolution profiling of histone methylations in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Histone H3K27ac separates active from poised enhancers and predicts developmental state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

A unique chromatin signature uncovers early developmental enhancers in humans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Sequence and chromatin determinants of cell-type-specific transcription factor binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Architecture of the human regulatory network derived from ENCODE data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

An integrated software system for analyzing ChIP-chip and ChIP-seq data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Model-based analysis of ChIP-Seq (MACS)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

TRANSFAC: a database on transcription factors and their DNA binding sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Identifying dispersed epigenomic domains from ChIP-Seq data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Systematic localization of common disease-associated variation in regulatory DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Individual Comparisons by Ranking Methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Selective binding of sterol regulatory element-binding protein isoforms and co-regulatory proteins to promoters for lipid metabolic genes in liver

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

SREBPs: metabolic integrators in physiology and metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Integrated expression profiling and genome-wide analysis of ChREBP targets reveals the dual role for ChREBP in glucose-regulated gene expression.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

ChromHMM: automating chromatin-state discovery and characterization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

A map of the cis-regulatory sequences in the mouse genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Genome-wide occupancy of SREBP1 and its partners NFY and SP1 reveals novel functional roles and combinatorial regulation of distinct classes of genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2014.02.002

10.1016/J.YGENO.2014.02.002

7 January 2021

Identifiers

DOI

1 reference

8 September 2017

1 reference

PubMed ID

24530516