(Q39027061)

English

The silent information regulator 3 protein, SIR3p, binds to chromatin fibers and assembles a hypercondensed chromatin architecture in the presence of salt

scientific article published on 24 March 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

The silent information regulator 3 protein, SIR3p, binds to chromatin fibers and assembles a hypercondensed chromatin architecture in the presence of salt (English)

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

author name string

Steven J McBryant

1

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

Christine Krause

2

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

Christopher L Woodcock

3

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

Jeffrey C Hansen

4

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

language of work or name

0 references

publication date

24 March 2008

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

Molecular and Cellular Biology

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

28

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

11

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

3563-3572

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

X-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Domain structure and protein interactions of the silent information regulator Sir3 revealed by screening a nested deletion library of protein fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Structure of the '30 nm' chromatin fibre: a key role for the linker histone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Chromatin architectural proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

X-ray structure of a tetranucleosome and its implications for the chromatin fibre

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Nucleosome arrays reveal the two-start organization of the chromatin fiber

1 reference

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9 September 2017

A model for step-wise assembly of heterochromatin in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

To the 30-nm chromatin fiber and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Reconstitution of nucleosome core particles from recombinant histones and DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

The origin recognition complex and Sir4 protein recruit Sir1p to yeast silent chromatin through independent interactions requiring a common Sir1p domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylation

1 reference

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9 September 2017

The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Dot1p modulates silencing in yeast by methylation of the nucleosome core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

The molecular biology of the SIR proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Sir3-dependent assembly of supramolecular chromatin structures in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Crystal structure of a nucleosome core particle containing the variant histone H2A.Z

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Identification of a novel allele of SIR3 defective in the maintenance, but not the establishment, of silencing in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

MENT, a heterochromatin protein that mediates higher order chromatin folding, is a new serpin family member

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Identification and interpretation of complexity in sedimentation velocity boundaries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

The higher-order structure of chromatin: evidence for a helical ribbon arrangement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Identification of a non-basic domain in the histone H4 N-terminus required for repression of the yeast silent mating loci

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Nucleosome organization of the yeast 2-micrometer DNA plasmid: a eukaryotic minichromosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

9 September 2017

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

1 reference

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9 September 2017

The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.

1 reference

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14 September 2017

Comparison of the structure and transcriptional capability of growing phase and stationary yeast chromatin: a model for reversible gene activation

1 reference

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14 September 2017

Electron microscopic imaging of chromatin with nucleosome resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

25 September 2017

The nucleosomal array: structure/function relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

25 September 2017

Domain organization and quaternary structure of the Saccharomyces cerevisiae silent information regulator 3 protein, Sir3p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

Modulation of the higher-order folding of chromatin by deletion of histone H3 and H4 terminal domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

Histone H3 amino terminus is required for telomeric and silent mating locus repression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

Point mutations in the yeast histone H4 gene prevent silencing of the silent mating type locus HML.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

Salt-induced structural changes of nucleosome core particles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

DNA folding by histones: The kinetics of chromatin core particle reassembly and the interaction of nucleosomes with histones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

17 June 2018

Multiple modes of interaction between the methylated DNA binding protein MeCP2 and chromatin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Switching on chromatin: mechanistic role of histone H4-K16 acetylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Salt-dependent intra- and internucleosomal interactions of the H3 tail domain in a model oligonucleosomal array

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Sedimentation velocity analysis of highly heterogeneous systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Role of the M-loop and reactive center loop domains in the folding and bridging of nucleosome arrays by MENT.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

A core nucleosome surface crucial for transcriptional silencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2423291

21 August 2018

Homogeneous reconstituted oligonucleosomes, evidence for salt-dependent folding in the absence of histone H1

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mechanism of nucleosome assembly onto oligomers of the sea urchin 5 S DNA positioning sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleosome core particle stability and conformational change. Effect of temperature, particle and NaCl concentrations, and crosslinking of histone H3 sulfhydryl groups

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation and stability of higher order chromatin structures. Contributions of the histone octamer

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hybrid trypsinized nucleosomal arrays: identification of multiple functional roles of the H2A/H2B and H3/H4 N-termini in chromatin fiber compaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast chromatin structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembly of defined nucleosomal and chromatin arrays from pure components

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The forces between protein molecules in solution: a summary

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin compaction by a polycomb group protein complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/18362167

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MCB.01389-07

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

8 September 2017

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